Rouxiella badensis subsp. acadiensis: H2866_02095
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Entry
H2866_02095 CDS
T06835
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbad
Rouxiella badensis subsp. acadiensis
Pathway
rbad03030
DNA replication
rbad03410
Base excision repair
rbad03420
Nucleotide excision repair
rbad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H2866_02095 (ligA)
03410 Base excision repair
H2866_02095 (ligA)
03420 Nucleotide excision repair
H2866_02095 (ligA)
03430 Mismatch repair
H2866_02095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbad03032
]
H2866_02095 (ligA)
03400 DNA repair and recombination proteins [BR:
rbad03400
]
H2866_02095 (ligA)
Enzymes [BR:
rbad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H2866_02095 (ligA)
DNA replication proteins [BR:
rbad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H2866_02095 (ligA)
DNA repair and recombination proteins [BR:
rbad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H2866_02095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H2866_02095 (ligA)
MMR (mismatch excision repair)
DNA ligase
H2866_02095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H2866_02095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QOI55970
LinkDB
All DBs
Position
complement(457616..459640)
Genome browser
AA seq
674 aa
AA seq
DB search
MATIQEQITTLRSQLRHHEYQYHVLDAPEVPDAEYDRLMQALRKLEEAHPELITPDSPTQ
RVGAAPLSAFDQVRHQVPMLSLDNVFDEESFLAFYKRVQDRLKVTTPLTFCCELKLDGLA
VSLLYENGELVQAATRGDGTTGENITMNVRTIRAIPLRLSGDNIPARLEVRGEVFMPQSG
FEALNEEARRTGGKVFANPRNAAAGSLRQLDSRITAKRPLTFFCYGVGLLEGGTLPASHY
ERLQQFKAWGLPVTHRVKLCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDSLETQETL
GFVARAPRWATAFKFPAQEQITQVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLRIGDTVVVRRAGDVIPQVVGVIADQRPEDAREVVFPTHCPVCHSDVERVEG
EAVARCTGGLFCGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLSAG
IMTGLDRMGPKSAQNLVAALEKAKETTFARFLYALGIREVGEATAANLASHYGSIDALRA
ADVESLKQVQDVGDVVAKHVVNFLGEEHNREVIDDLITLVHWPAPKVIVAEEINSPFAGK
VLVLTGSLSILSRDEAKDRLTALGAKVTGSVSKKTDMVIAGEAAGSKLVKAQELGIPVID
EAEMIRLLSESEGA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccacaattcaagaacaaatcacaactctgcgcagccagctgcgtcaccatgaatac
cagtatcacgtactggatgcgcccgaagtgcctgacgccgaatacgaccggctgatgcaa
gcactgcgcaagctcgaagaagcacatcctgaactcatcacccctgactccccgactcaa
cgcgtgggcgcggcgccactgtcggcgtttgatcaggtgcgtcaccaggttccgatgctg
tctttggacaacgttttcgatgaagagagcttcctggctttctacaaacgcgttcaggat
cgtctgaaagtgaccacgccgctgaccttctgctgcgagctcaagcttgacgggctggct
gtcagtctgctgtatgaaaacggcgagctggtgcaggctgcgactcgtggcgacgggact
accggtgaaaatatcaccatgaacgtgcgcaccatacgagcgataccgctgcgtctcagc
ggtgacaatattcctgctcgcctggaagtccgcggcgaagtctttatgccgcaatcgggt
tttgaggcgctgaatgaagaggcgcgacgcaccggcggtaaagtgtttgccaacccacgt
aacgccgccgcaggatcgctgcgccagcttgattcgcgtattaccgccaagcgcccactg
accttcttctgctacggcgtagggctgcttgagggcgggacgttacccgctagtcattat
gagcgattacagcaattcaaggcctggggactgccggtcacccaccgcgttaaactgtgc
acaggcagtgacgaagtgctggcgttttaccgtcaggtggagcaggaccgcgcgcagctc
ggtttcgacatcgatggcgtggtggtgaaaattgactcccttgaaacgcaggaaacgctg
ggctttgtggcccgtgcaccgcgttgggcaacggcctttaagttcccggcgcaggagcaa
ataactcaggtcaaagacgtcgaatttcaggtcgggcgaaccggggccatcacgccggtg
gcacgtcttgagccggtgctagttgcaggcgtgatggtcagcaatgccacgctgcataac
gccgatgaaatcgaacgtctgggcctgcgtatcggtgataccgtggtggtacgccgtgcc
ggtgacgttattccacaggtggtgggcgttatcgccgaccaacggcctgaggacgcacgc
gaggtggtgttcccgacccattgcccggtctgtcattccgacgtggagcgagttgagggc
gaggccgttgcgcgctgtaccggcggcttgttctgcggagcacagcgtaaagaagcgcta
aaacactttgtctcacgccgcgcgcttgacgttgacggcatgggtgacaaaattatcgat
cagctggttgagaaagagtacgttaaaacgcctgccgacctgttccgcctcagtgcaggt
atcatgaccggtctggatcgcatggggccaaagtcggcgcagaatctggttgccgcactg
gagaaggcgaaggaaaccacctttgcccgtttcctgtatgcgctgggcattcgcgaggta
ggtgaagccacggcggctaatctggcgtcgcactatggttctattgatgcccttcgtgcc
gccgacgtcgagtcgctaaagcaggtgcaggacgtcggtgatgtggtggcaaaacacgtg
gtcaacttcctcggcgaagagcataaccgcgaggtgattgatgacctgataaccctcgtg
cactggccagcgccgaaggtgattgtcgccgaagagataaacagcccgttcgccggcaag
gtgctggtgctgacgggttcactgtcgattttgtcgcgtgatgaggccaaagaccgcctg
acggcattaggggcgaaagtgaccggcagcgtgtcgaagaaaaccgatatggtgattgct
ggagaagccgcgggatccaagctggtgaaggcgcaggaacttggcattccggttatcgat
gaagctgaaatgatccgcctgctgtcggaaagtgaaggggcgtaa
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