Rhizobium bangladeshense: J2J98_14295
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Entry
J2J98_14295 CDS
T07228
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rban
Rhizobium bangladeshense
Pathway
rban03030
DNA replication
rban03410
Base excision repair
rban03420
Nucleotide excision repair
rban03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J2J98_14295 (ligA)
03410 Base excision repair
J2J98_14295 (ligA)
03420 Nucleotide excision repair
J2J98_14295 (ligA)
03430 Mismatch repair
J2J98_14295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rban03032
]
J2J98_14295 (ligA)
03400 DNA repair and recombination proteins [BR:
rban03400
]
J2J98_14295 (ligA)
Enzymes [BR:
rban01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J2J98_14295 (ligA)
DNA replication proteins [BR:
rban03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J2J98_14295 (ligA)
DNA repair and recombination proteins [BR:
rban03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J2J98_14295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J2J98_14295 (ligA)
MMR (mismatch excision repair)
DNA ligase
J2J98_14295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J2J98_14295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
DUF4796_N
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
QSY87369
LinkDB
All DBs
Position
complement(2927602..2929758)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEAR
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPQELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPEETQFGMVQTFKEWGFPVNPLMKRLNAVADILSHYDEIGLKRPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVLEKRA
ANAKAYEFPRTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQVDFFFENEDPSLQIRTAPDIFTLEKRQAHSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMQEATPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNIEVIGRLLEEVTPAEAEQPTTSGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDFVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggccgccgccgagctc
gagcggctcgcaagggagatcgcgcatcacgatgcgctataccacggcaaggaccagccg
gagatctcggacgcggattacgacgcgctgaagcgccgcaacgatgcgctggaagcgcgg
tttcccgagctgatccgtgaggacagcccgtcgcggcgggtcggtgctgcgccgtcggtt
accttctcgcccgtcgttcacgcgcggccgatgctgtcgctcgacaatacgttttcgcag
gaggacgtgcaggatttcgtcgccagcgtctatcgcttcctcggccgcctgccagatcag
tcgatcgcctttaccgccgaaccgaagatcgacgggctgtcgatgtcgatccgatatgag
aacgggcggctgacgacggctgccacgcgcggcgacggcacaaccggggagaatgtcacc
gccaacatccgcaccatcgcggaaattccccaggaattgccgaagggcgttcccgcggtc
gtggagatccgcggcgaggtctatatggcgaagagcgatttcctggcgctgaaccggcag
atggaagcggaaggcaagcagacctatgtcaatccgcgcaatacggccgccggatcgttg
cgtcaactcgacgccaaggtgacggcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtcggagatgcctgaagaaacgcagttcggcatggtgcagaccttcaaggag
tggggttttcccgtaaacccgctgatgaagcggctgaatgcggtcgccgacatcctatcg
cattatgacgagatcggcctgaagcgacctgatctcgactacgatatcgacggcgtcgtc
tataaggtcgacagtctggaactgcagcagcgccttggcttccgctcccgttcgccccgc
tgggcgacggcgcacaagttccctgccgagcaggcctttactgaggtcgagaagatcgag
attcaggtcggccgcacgggggcgctgacgccggtggcgcggctgaagccgatcacggtc
ggcggcgtcgtcgtcaccaatgcgacgcttcataatgaggattacatcaagggcatcggc
aatagcggtgagcgcatacggccggaggagcacgatatccgggagggcgacaccgtcatc
gtccagcgcgccggcgatgtcattccgcagatcctggacgtggtgttggagaagcgtgcg
gccaatgccaaggcatatgaattcccgaggacgtgccccgtctgcggttcgcacgcggtg
cgcgaggtcaacgagaagaccggaaagatggattccgttcgccgctgcaccggcggcttc
atctgccgggcgcaggcgacggagcatctgaaacacttcgtctcgcgcaacgccttcgat
atcgaagggcttggttcgaagcaggttgacttctttttcgaaaacgaggatccgtccctg
cagatccggacggcgcccgatatcttcaccttggagaagcgccaggcgcattctctgacc
aagctggaaaatatcgacggcttcggcaaagtcagcgtcggcaagctctatgcggcgatc
aacgagcggcgcagcattgcgctgcatcgcttcatctatgcgctcggcatccgccatgtc
ggcgagaccacggcaaagctgctggcgcgctcctacggcacctatgaggcctttgcgacc
gcaatgcaggaggcaacaccgctttccggcgatgcgtggaacgatctcaacgctatcgaa
ggaatcggcgaggtcgtggcgcgcgccatggtcgaattttacaaggagccgcgcaacatc
gaggtgatcggccgtctgctcgaagaagtgacgcctgccgaggccgaacagccgaccacg
tccggaagcccggtcgccggcaagaccgtggtctttaccggctcgctcgaaaaattcacc
cgcgatgaggcgaaggcgagggccgaaagcctcggcgccaaggtggcgggctcggtgtcg
aagaaaaccgacttcgtcgttgccggccccggcgccggctctaaactcgataaggcgcgt
gagctcggtgtccagacgatggacgaggatgagtggttggcgctgattggcgggtag
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