KEGG   PATHWAY: rbb03030
Entry
rbb03030                    Pathway                                
Name
DNA replication - Rhinopithecus bieti (black snub-nosed monkey)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rbb03030  DNA replication
rbb03030

Organism
Rhinopithecus bieti (black snub-nosed monkey) [GN:rbb]
Gene
108513660  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
108513754  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
108514888  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
108516047  PRIM1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
108518201  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
108518701  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
108520802  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
108522672  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
108522735  RFC3; replication factor C subunit 3 [KO:K10756]
108526229  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
108526526  RFC2; replication factor C subunit 2 [KO:K10755]
108527027  PRIM2; DNA primase large subunit [KO:K02685]
108530459  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
108530716  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
108531691  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
108532151  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
108533343  PCNA; proliferating cell nuclear antigen [KO:K04802]
108533602  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
108534789  RPA4; replication protein A 30 kDa subunit [KO:K10741]
108535349  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
108535799  [KO:K02327] [EC:2.7.7.7]
108536748  RFC1; LOW QUALITY PROTEIN: replication factor C subunit 1 [KO:K10754]
108537525  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
108537642  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
108538127  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
108539296  RFC5; replication factor C subunit 5 [KO:K10756]
108539601  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
108539644  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
108540136  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
108540866  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
108541548  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
108543297  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
108543412  RPA3; replication protein A 14 kDa subunit [KO:K10740]
108544013  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
108544513  POLE; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system