Mucinivorans hirudinis: BN938_2975
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Entry
BN938_2975 CDS
T03205
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbc
Mucinivorans hirudinis
Pathway
rbc03030
DNA replication
rbc03410
Base excision repair
rbc03420
Nucleotide excision repair
rbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN938_2975
03410 Base excision repair
BN938_2975
03420 Nucleotide excision repair
BN938_2975
03430 Mismatch repair
BN938_2975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbc03032
]
BN938_2975
03400 DNA repair and recombination proteins [BR:
rbc03400
]
BN938_2975
Enzymes [BR:
rbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN938_2975
DNA replication proteins [BR:
rbc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN938_2975
DNA repair and recombination proteins [BR:
rbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN938_2975
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN938_2975
MMR (mismatch excision repair)
DNA ligase
BN938_2975
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN938_2975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Auto_anti-p27
HHH
PTCB-BRCT
BRCT_2
zf-NADH-PPase
TF_Zn_Ribbon
zf-C4_Topoisom
KorB
zf-FPG_IleRS
zf-ribbon_3
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
CDN33040
UniProt:
A0A060RBP4
LinkDB
All DBs
Position
complement(3038980..3041019)
Genome browser
AA seq
679 aa
AA seq
DB search
MTAEKILKLRSLIDKYNYEYYTLNRPTVSDHEFDKLLAELAALETENPQFYDANSPTQRI
GADLTSGFAPAKHHFAMYSLANTYSEGELRDFTVRIQKEHPEVEDGAEYVAELKFDGTAI
SLTYERGRFVRAVTRGDGTTGDDVSANVRTIRSIPMVLQGDDFPVLMEVRGEIYLPFDSF
EKLNRQRVEEQEEPFANARNAAAGSLKLQSPAEVAARGLECILYAVQSEQMPCATHFEAL
AKLGKWGFRTSEHSRLCKSIDQLAAFIREWETRRFTLGYATDGVVIKVNDFRTQRDLGST
AKAPRWAVAYKFKAESVATRLLSIEFSVGRTGAITPVANLEPVQLAGTTVKRASLHNADQ
IALLDVRLGDMVYVEKGGEIIPKITGVDLLMRPSDSQPLIYISECPECGTPLVKNEDEAK
HYCPNFYGCPPQIIGRITHFISRKAMYIDSLGEETVTQFYKNGFINDPSDLYVLKKAQIA
GLERMGDKSAENIINGIDESRKVPFSRVLFAIGIRYVGETTAKKIAAAAGSIDALAAMSR
EQLCEIDEVGAKIADSIIDFFSNEHNITLIDKLKEAGVQFAEQERARSDFQPLAGLKVVI
SGTFQNYGRDQIKELIELCGGTNQSSVAKNTDLFVVGSNVGPAKMEKARKIGTRIVDETK
FSEMIKQKNTIPTSLFPEL
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagagaaaattttgaaattacgctcactcatagacaaatataactatgagtac
tatacacttaatcgaccaacagtcagcgaccacgagttcgataaacttttggcagagctc
gcagcactagaaacggagaatccgcaattttatgatgcgaattctcccacacagcgcata
ggtgctgacctcacttcggggtttgctcccgccaagcaccactttgcgatgtactcactc
gcaaatacctactccgaaggcgaacttcgcgattttactgttcgcatccagaaggagcat
cctgaggttgaggatggggctgaatatgttgccgaactcaaattcgatggcacggctatc
agcctcacttatgagcgtgggcgttttgtgagagcggtaacgcgaggcgacggcaccacg
ggcgatgatgtgtcggcaaatgtacgcaccatacgctcaattcctatggtgttgcagggg
gacgattttccggtgctgatggaggtgaggggtgaaatttatttgccctttgatagtttt
gaaaagttgaatcggcaacgcgtcgaggagcaggaagagccatttgccaatgcacgtaat
gctgcggcagggtcgctcaagttgcagagcccggcggaggttgctgcgcggggcttggag
tgcattctatatgccgtgcagagcgagcagatgccgtgtgccacacatttcgaggcgttg
gcaaaacttggcaagtggggatttcggacaagtgaacattcgcgactatgcaaaagcatt
gaccaacttgcagcctttataagagaatgggaaacacgccgttttactctgggatatgcc
actgatggagtggtgattaaagtgaatgactttcgtactcagcgcgatttgggttctacg
gcaaaggctccacgctgggcggttgcctataagttcaaagccgaatctgtggctacgcgc
ctgctgagcatagagtttagtgtggggcgtacgggggcgattacgccggttgccaacctc
gagcctgtgcagttggcgggcactaccgtcaagcgagcctcgctccacaatgccgaccaa
atcgcgctgttggatgtgcgattgggcgatatggtctatgtggagaaggggggcgagatt
attccaaagattacgggtgtcgatttactgatgcgcccctcggatagccaacctcttata
tacattagtgagtgccccgagtgtggaacgccgctggtcaaaaatgaggatgaggcgaaa
cactactgcccaaacttctatggctgcccgccgcagattatcgggcgcatcacccacttt
atttcgcgcaaagctatgtatatcgactcgttgggcgaagagaccgtaacacaattttat
aaaaacggttttattaatgacccgtccgacctatatgttctaaaaaaagcacaaatcgcc
ggtttagagcgtatgggcgacaagtcggcagagaatattattaatggtattgatgagtct
cgaaaagtgcccttctcgcgggtgttgtttgccatcgggattcgctatgtgggtgagacc
actgccaagaaaattgctgccgccgcaggctcgattgatgcccttgcagcaatgagccgc
gagcaactatgtgagattgacgaagttggcgcaaagatagcagattccataattgatttt
ttctccaacgagcacaatataactctcattgataagttaaaggaggcgggcgtgcagttt
gccgagcaggagcgagcaaggagtgatttccaacctttggcagggttaaaggttgtcatt
tcgggcacgttccaaaactacggacgcgaccagattaaggagttgatagagctatgtggc
ggcacgaaccagagcagcgtagccaagaataccgacttatttgtcgttggcagcaatgtc
ggacccgccaaaatggagaaagcacgcaaaattggcacacgaatcgttgatgaaactaaa
ttttcagagatgatcaagcaaaaaaatactatccctacatccctattccccgaactatga
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