Rickettsia bellii RML369-C: RBE_0193
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Entry
RBE_0193 CDS
T00339
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbe
Rickettsia bellii RML369-C
Pathway
rbe03030
DNA replication
rbe03410
Base excision repair
rbe03420
Nucleotide excision repair
rbe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBE_0193 (ligA)
03410 Base excision repair
RBE_0193 (ligA)
03420 Nucleotide excision repair
RBE_0193 (ligA)
03430 Mismatch repair
RBE_0193 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbe03032
]
RBE_0193 (ligA)
03400 DNA repair and recombination proteins [BR:
rbe03400
]
RBE_0193 (ligA)
Enzymes [BR:
rbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBE_0193 (ligA)
DNA replication proteins [BR:
rbe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBE_0193 (ligA)
DNA repair and recombination proteins [BR:
rbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBE_0193 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBE_0193 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBE_0193 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBE_0193 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
UBAP-1_UBA2
Motif
Other DBs
NCBI-ProteinID:
ABE04274
UniProt:
Q1RK40
LinkDB
All DBs
Position
complement(227732..229801)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHL
ILENSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIFC
EPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKINNAPELLEVRGEI
YIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAKEEL
ANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLNDFA
LQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVIVSR
ATLHNYQEIARKDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATTFDPPLFCPSCNSKL
HYVPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPYDIF
FLKEKNEASLTKLENMDGWGKKSVENLFNNIEKSKNVSLPRFIYALGIRHIGEQNAKLLT
REFGSYENFIAQMELLKENDPEIYQKLNNLDGIGDKMLVDIIDFFDVKENIELIKNLSEV
LNIEDYKETREQSSLTGKIVVFTGSMPTLSRAEAKATAEKLGAKVAASVSSNTDLVIAGE
DAGSKLKKAKELGIKIIDEAEWLTLVRDI
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatatagaaaaaataaacgaagaagaagcaaaaaaattattaatagagctagct
gataaaatagcacaatataaccatgcttattatatagaagataagccactagtttcagat
gccgagtatgaccagctatttaacaccaatctaaaattagagcaaaaatttcctcatctc
atactagaaaatagccctagcaaaaaaataggtgctaaagtcgaaaataaatttgctaaa
gtcacgcatcaagtgccgatgctatctcttagtaatgtatttgatgaagaggatgtaaaa
gattttttagaccgtattaaaagctttttacgccttgatcaattctctcctatcttttgc
gagcctaaaatagatggtttatcatttgctgctacctacaaaaacggcattcttacaaca
ggtgcaacaagaggcgatggttatataggtgaggatataacggcaaatatcaaaacaata
aaagattttcctcacaaaattaataatgctccagagcttttagaagtacggggggaaatt
tatattgaaaaaaatgactttacaagtttaaaccaagagcaagaacagcaaggcaaagat
aaatttgctaatcctcgtaatgcggctgccggctcgcttcgtcagcttgatccttccgtt
actgcaaaaagaccactgaaatattttgtttatgctataggttctgcaaaagaggagcta
gcaaactctcaagatcagctacttgcaaaatttaaagagcttggttttaacgttaatgaa
ataggtaaacttgcaaactccgaagaagagatatttagcttttacgaatatttaaaaact
aacaggaaaaatttaccttatgaaattgatggggtagtatataagctaaatgattttgct
ttgcaagatagaatgggcttcattgctaggtcgccaaggttcgctactgctcacaaattc
cccgctataatagggcaaaccaaactactttctattacagtgcaagtaggtagaaccggc
acattaacaccagtagcagagcttgagcctatagaaattggcggggtcatagttagcaga
gcaacattacataactatcaagagatagcacgaaaagacgtacgggttggcgattatgta
tttttgcaacgtgcaggtgacgtaatcccgcaaattaccggagttgatcttgctaaacgt
tctgctgatgccacaacattcgatccacctttattttgtccgtcatgcaattctaaatta
cattatgttcctgaagatattataatacgttgcgataatggtcttaactgcccagctcag
aattatgagcgtatacgtcatttcgtatcaaaaaacgctatggatattgaagggcttgga
cgtaagcaagttgagtttttaatcgataaaggcttaattagtaacccttatgatatattc
tttttaaaagaaaaaaacgaagctagcttaaccaaacttgaaaatatggacgggtggggt
aaaaaatctgtagaaaatcttttcaacaatatagaaaaatcaaaaaatgttagtttgcct
aggtttatatatgccttaggtataaggcatataggcgagcagaacgctaagttactcact
agagaatttggtagctatgaaaattttatagctcaaatggaattactaaaggaaaacgat
cctgaaatttatcaaaaattaaacaatcttgacggtatcggcgacaaaatgttagtagat
atcattgatttttttgatgttaaggaaaatattgagcttatcaaaaatttaagtgaagta
ttaaatattgaagattataaagagactagggagcaaagtagcttaacaggtaaaatagta
gtatttactggcagcatgccaactttgtcacgagctgaagcaaaagcaactgccgagaaa
cttggagcaaaagttgcagctagtgtttcttctaataccgatttagtaatagccggcgag
gatgcaggtagtaagctcaaaaaagcaaaagagctaggaattaaaattattgatgaagca
gaatggcttactcttgtaagagatatttaa
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