Robiginitalea biformata: RB2501_16059
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Entry
RB2501_16059 CDS
T00992
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbi
Robiginitalea biformata
Pathway
rbi03030
DNA replication
rbi03410
Base excision repair
rbi03420
Nucleotide excision repair
rbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RB2501_16059
03410 Base excision repair
RB2501_16059
03420 Nucleotide excision repair
RB2501_16059
03430 Mismatch repair
RB2501_16059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbi03032
]
RB2501_16059
03400 DNA repair and recombination proteins [BR:
rbi03400
]
RB2501_16059
Enzymes [BR:
rbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RB2501_16059
DNA replication proteins [BR:
rbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RB2501_16059
DNA repair and recombination proteins [BR:
rbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RB2501_16059
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB2501_16059
MMR (mismatch excision repair)
DNA ligase
RB2501_16059
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RB2501_16059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
TF_Zn_Ribbon
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
EAR15858
UniProt:
A4CLV9
LinkDB
All DBs
Position
complement(2774333..2776354)
Genome browser
AA seq
673 aa
AA seq
DB search
MTEKVNKRDIAEKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEFYD
PASPTQRVGGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVLGDVPVTFTCELK
YDGASISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRGEIVL
PLEGFARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMAGRDLGADS
HFEILGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNSLQQQE
ELGYTAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTVKRASL
HNADQIAKLDVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPTTYISACPECGTELVRN
PGEAQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGSETVELLFKEGLIGDYADLYTLT
TDDLLPLERMAEKSAANLVEGVAASRKVPFERVLFALGIRYVGETVAKKLARAYKNIDAL
MAASADELQQVDEIGQRIAGSVVEFFSDPVNRERVEKLKGHGLQFSLSEEQLRGQTDLFR
GKTFVVSGVFESIGRNELKKRIEDNGGKVTSSVSARTNFLVAGANMGPSKREKADKNGVP
IISETQFLEMLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaaagtgaacaagcgggatatagcggagaagatacaggcgctccgggacgaa
ctccgggaccataattaccgctattacgtactggacgaaccggtaatcagcgactatgac
ttcgacatgaagctcaaggcgttgcaggacctcgagaagcagcacccggaattttacgac
ccggcttccccgacgcaacgcgtgggaggtgccatcaccaaaaattttgagaccgtcgtc
cacgattacccgatgtactccctggacaattcctattccgtggaggagttgcgggaatgg
gaaaagcgcatccagcgggtgctgggcgatgttccggtgacttttacctgcgagctgaag
tacgacggggcatccatcagcctgacctaccaggacggcgctttgttgcgagccgttacc
cggggggacggtacgcagggcgatgacgtgacgacgaatgtccgaaccattcggtccatc
ccgctccggctgcagggcgactatcccaaccgctttgatatccggggcgaaattgtgttg
ccgctggaaggttttgcccgtatgaaccgggaacgggtcgaaaacggggaggacccctat
atgaatccaaggaacaccgcttcggggagcctgaaattgcaggatagcagcatcgtggct
gagcgccccctggattgtctgctttacgggatggcaggccgggacctcggggccgattcg
cactttgaaatactcggtttggcccggaaactcgggtttaaggtgccggacacggccaaa
ttgtgcaagaatatcgacgaggttgtggcctacctggagtactgggattctcaccgcctg
gaactgccttatgaaacagacggggtggtggtcaaggtcaatagcctgcagcaacaggaa
gaattggggtatacggccaaatcgccccgatgggccatggcgtacaaattcaaatccgag
caggccgccacgcgcctggaacggattacctaccaggtaggccgaaccggtgcgattacc
ccggttgccaacctggaacctgtcttgctggccggaaccaccgtcaagcgcgcatccctg
cacaatgccgaccagattgccaaactggacgtacgggaaggggataccgtttacgtggaa
aaaggcggggagatcatcccgaagatcacgggggtggattttagcaaacgcccggaaaac
agtgccccgaccacctacatttcggcctgtccggagtgcgggaccgagctggtgcgaaac
ccgggagaagcccagcatttctgcccgaacgacaccgggtgcccgccccagatcaccggg
cgcatccagcattttatttcccgaaaagccatggatattgaagggctgggctccgaaacc
gtagagctcctgtttaaggagggactgatcggggattacgcggatctgtacacgctgacc
actgacgacctgcttcccctggaacgcatggcggagaaatctgcagccaacctggtggaa
ggggtggccgcctccaggaaagtgcctttcgagcgcgtgttgtttgccctggggatacga
tatgtaggggaaaccgttgccaagaaactcgcaagggcctataagaacatcgatgcgctg
atggctgccagtgccgacgagctgcaacaggtagacgaaatcggccagcggattgcggga
agcgtggtggaatttttcagcgacccggtcaaccgggaacgggtcgaaaagctcaaggga
cacggcctgcagttctccctgagtgaagaacaactcagggggcaaaccgatttattccgg
ggcaaaacttttgtggtctccggggtctttgagtccattggacggaacgaattaaaaaaa
cgcatcgaggacaatggggggaaggtcacctcctcggtatcggcccgtacgaactttttg
gttgccggggccaacatggggcccagcaagcgggaaaaggcggacaaaaacggggtaccc
attatttcggaaacccagttcctggaaatgctcggggactga
DBGET
integrated database retrieval system
