Rhizobium binxianense: PO860_13335
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Entry
PO860_13335 CDS
T11088
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbin Rhizobium binxianense
Pathway
rbin03030
DNA replication
rbin03410
Base excision repair
rbin03420
Nucleotide excision repair
rbin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PO860_13335 (ligA)
03410 Base excision repair
PO860_13335 (ligA)
03420 Nucleotide excision repair
PO860_13335 (ligA)
03430 Mismatch repair
PO860_13335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbin03032
]
PO860_13335 (ligA)
03400 DNA repair and recombination proteins [BR:
rbin03400
]
PO860_13335 (ligA)
Enzymes [BR:
rbin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PO860_13335 (ligA)
DNA replication proteins [BR:
rbin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PO860_13335 (ligA)
DNA repair and recombination proteins [BR:
rbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PO860_13335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PO860_13335 (ligA)
MMR (mismatch excision repair)
DNA ligase
PO860_13335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PO860_13335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WEA58692
LinkDB
All DBs
Position
complement(2689253..2691409)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEVR
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLMTAATRGDGTTGENVTANIRTIAEIPNELPKGLPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRA
ADAGSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFEAGMREAETLAGDAWNDLNAID
GIGEVVARAMVEFYKEPRNVEVITRLLASVTPEEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgagctc
gaacggctggcaagggagatcgcgcatcacgatgcgctctaccacggcaaggaccagccg
gagatttcggatgccgattacgacgcgctgaagcgccgcaacgatgcgctggaagtgcgg
tttcccgagcttatccgtgaggacagcccgtcgcggcgtgtcggtgccgcgccttccgtc
accttctcgccggtcgtccatgcgcggccgatgctgtcgctcgacaacaccttctcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgtttcctcggccgtctgccggatcag
tcgatcgcctttaccgccgagccgaagatcgacggtctgtcgatgtcgatccgttacgag
aacggcaggctgatgacggctgcgacgcgcggcgacggcacgacgggggagaatgtcacc
gccaacatccgcaccatcgccgagatccccaacgagctgccgaagggcctgcccgcggtc
gtggagatccgcggcgaggtctatatggccaaaagcgacttcctggcgctgaaccggcag
atggaggcggaaggcaagcagacctatgtcaacccgcgcaatacggccgccggctcgctg
cgccagctcgacgccaaggtgacggcgagccgcaagctgaaatttttcgcctatgcctgg
ggcgagatgtctgacatgcccgccgacacacagttcgccatggtgcagacctttaaggat
tggggttttccggtcaatccgctgatgaagcggttgaactcggtcgccgatatcctggcg
cattatgacgagattggcctcgagcgtccggatctcgactacgacatcgacggcgtcgtc
tacaaagtcgacagtctcgaactgcagcagcgcctcggcttccgctcgcgttcgccgcgc
tgggcaaccgcgcataagttcccggcagagcaggccttcaccgaggtcgagaagatcgag
atccaggttggccgcaccggagcgttgacgccggtggcgcggctgaagccgatcacggtc
ggcggcgtcgtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggtatcggc
aatagtggtgagcgcatccggccggaggaccacgatatccgcgaaggcgataccgtcatc
gtccagcgcgccggcgacgtcattccgcagatccttgacgtggtgatggaaaaacgcgcc
gccgacgccggctcatacgagtttccgaagacatgcccggtctgcggttcgcatgcggtg
cgcgaggtcaacgagaagaccggcaagatggattcggtgcgtcgctgcaccggcggcttc
atctgccgggcgcaggcgaccgagcatctgaagcacttcgtctcgcgcaacgccttcgat
atcgaggggctgggctcgaagcagatcgacttcttcttcgaaaatgaggatccgtcgctg
cagatccgcaccgcgcccgatatcttcacgctggagaagcgccagcagcaatcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagcgtcggcaagctctatgcggcgatc
aacgaacggcgcagcattgcgctccaccgcttcatctacgcgctcggcatccgccatgtt
ggcgagaccacggcgaagctgctggcgcgctcctatggcacctatgcggccttcgaagcc
gggatgcgggaggccgagacgcttgccggtgatgcgtggaacgatctcaacgccatcgac
ggcattggcgaggttgtcgcgcgtgccatggtcgaattctacaaggagccgcgcaatgtc
gaggtgatcacccggctgctcgcctcggtgacgcctgaggaggccgaacagccggtgacg
gcaggcagcccggtcgccggcaagaccgtggtgttcaccggctcgctggaaaaattcacc
cgcgacgaggcgaaggcgagggccgaaagcctcggcgccaaggtggcgggatcggtctcg
aaaaagaccgacatcgtcgttgccggccccggcgccggctccaagctcgacaaggcgcgc
gagctcggcgtgcagacgatggatgaggacgagtggctggcgctgatcagcgggtga
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