KEGG   Pseudogemmobacter blasticus: B6K69_03070
Entry
B6K69_03070       CDS       T05669                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rbl  Pseudogemmobacter blasticus
Pathway
rbl03030  DNA replication
rbl03410  Base excision repair
rbl03420  Nucleotide excision repair
rbl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rbl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B6K69_03070
   03410 Base excision repair
    B6K69_03070
   03420 Nucleotide excision repair
    B6K69_03070
   03430 Mismatch repair
    B6K69_03070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbl03032]
    B6K69_03070
   03400 DNA repair and recombination proteins [BR:rbl03400]
    B6K69_03070
Enzymes [BR:rbl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B6K69_03070
DNA replication proteins [BR:rbl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B6K69_03070
DNA repair and recombination proteins [BR:rbl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B6K69_03070
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B6K69_03070
   MMR (mismatch excision repair)
    DNA ligase
     B6K69_03070
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B6K69_03070
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT Auto_anti-p27 Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: AWD20767
LinkDB
Position
complement(641737..643986)
AA seq 749 aa
MAPKPVDQLTETEARAELADLAARLVAANEAYHTLDAPEISDADYDALKRRNAEIEARFP
GLKRADSPSDQVGAGVADGFGKITHAVRMLSLENAFEDGDVADFEDRVRKYLGLEGPLLF
TAEPKIDGLSLSLRYEGGVLVQAATRGDGEVGENVTENALTIADIPARVTGAPAVMEVRG
EVYMSHADFAALNDRQAAAGDKTFANPRNAAAGSLRQLDSRITAARPLRFFAYAWGELSE
PLAATQFAAIARLRAMGFQTNPLTALCDGPAALLAQYRAIEAQRATLGYDIDGVVYKVND
LALQQRLGFRATTPRWAIAHKFPAQLAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVV
SNATLHNEDYIAGRDNAGQPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEGAVPY
VLPDTCPDCGSPAIREPGDSIRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQIELF
FADPDLPVKTPADIFTLAERNARNLMRLENRDGFGKRSVEKLFAAIEDRRRIAFERFLFA
LGIRHLGEVAAKDLARHYLNWAALAAAIDAAHPAALRHLAADEAEAAERAAAAEEGRRAR
VKEARDRVWETDPVAPEARAAWEEMLSIEGLGAVLAASLVSTLAQGSHERDAVEALVAQL
REIVPPVARAAASPVAGLTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSAKTDLLVAGP
GAGSKAKDAERLGIRMIDEDGWLALIGAA
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcgccgaaacctgtggaccagttgaccgagaccgaggcgcgggcagagcttgccgac
cttgccgcccgccttgtagcggcgaatgaggcctatcacacccttgatgcccccgagatc
agcgatgccgactatgacgcgctgaaacggcgcaacgccgaaatcgaggcccggtttccc
ggcctgaagcgcgccgacagcccgtcagatcaggtgggcgcgggggtggctgacggcttt
ggcaagatcacccatgccgtgcggatgctgagcctggaaaatgcgtttgaagatggcgat
gtggccgatttcgaagaccgggtgcgcaagtatcttgggcttgaggggccgctgctgttc
accgcagaacccaagatcgacgggttgtcgctgtcgctgcgctatgaaggcggcgttctg
gtgcaggccgccacccgtggcgacggtgaggtgggcgagaacgtcaccgaaaacgccctg
accattgccgacattccggcgcgcgtgacaggcgcccctgcggtgatggaggtgcggggc
gaagtctacatgtcccatgccgatttcgctgcgctgaatgacaggcaggcggcggcgggc
gacaagacctttgccaatccgcgcaatgccgccgccggcagcctgcggcagcttgattcc
cgtatcaccgccgcccggccgctgcggttctttgcctatgcctggggcgaactgtccgaa
ccgctggccgccacccagttcgccgccatcgcccggctgcgcgcgatggggttccagacc
aacccgctgacggcgctgtgcgatggtcctgcggccctgctggcgcagtatcgcgccatc
gaggcgcagcgtgcgacgctgggctatgacatcgacggcgtggtctacaaggtgaacgat
ctggcgctgcaacagcggcttggctttcgcgccacaacgccccgctgggcaatcgcgcac
aagtttcccgcgcaactggcctggacccggcttgaggcgatcgacatccaggtcggccgc
accggcgcgctgtcgccggtggcgcggctgacgccggtcacggtgggcggtgtggtggtc
agcaacgccacgctacacaatgaggattacatcgccgggcgcgacaatgccggccagccc
atccgtgacggcaaggacattcgcgtcggggactgggtacaggtttaccgcgcaggggac
gtgatcccgaaggtggcggatgtcgatctgtcgaaacgccccgagggcgcggtgccctat
gtgctgcccgacacctgccccgattgtggcagcccggcgatccgcgagcccggcgattcc
atccgccgctgcacgggcgggctgatctgcccggcccaggcggtggaaaagctgaagcat
ttcgtcagccgcgccgcctttgacattgaaggtctgggggcgaagcagatcgagctgttc
tttgccgacccggacctgccggtgaagacgcccgccgacatcttcaccctggccgaacgc
aacgcccgcaacctgatgcggctagaaaaccgcgacgggttcggcaagcgcagcgttgaa
aaactgttcgccgccatcgaggaccggcgcaggatcgcctttgaacgcttcctcttcgcg
cttggcatccgccatctgggcgaagtggcggccaaggatctggcgcggcattacctgaac
tgggctgcccttgccgctgcgattgatgcggcgcaccccgccgcgctgcgccatctggcc
gccgatgaggcagaggcggccgaacgggccgccgccgccgaagaggggcggcgtgcgcgg
gtgaaagaggcgcgcgacagggtgtgggagaccgatccggtggcgccggaggcgcgcgcc
gcctgggaggagatgctgtcgatcgaggggctgggggcggttctggcggcctcgcttgtc
agcacgctggcacagggcagccatgaacgcgatgcggtcgaggcgctggtggcgcagttg
cgcgagatcgtgcccccggtggcccgcgccgccgccagcccggtggccgggctgaccgtg
gtcttcaccggcacgctggaaaaaatgacccgcgccgaagccaaggcccgggccgaggct
ttgggcgccaaggtggccggcagcgtcagcgccaagaccgaccttctggtcgccgggccg
ggggcagggtccaaggcgaaggatgccgaacgccttggcatccgcatgatcgacgaggac
ggctggctcgccctcatcggcgccgcatga

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