Rhizobiales bacterium NRL2: TEF_06010
Help
Entry
TEF_06010 CDS
T04419
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03030
DNA replication
rbm03410
Base excision repair
rbm03420
Nucleotide excision repair
rbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TEF_06010
03410 Base excision repair
TEF_06010
03420 Nucleotide excision repair
TEF_06010
03430 Mismatch repair
TEF_06010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbm03032
]
TEF_06010
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_06010
Enzymes [BR:
rbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TEF_06010
DNA replication proteins [BR:
rbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TEF_06010
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TEF_06010
NER (nucleotide excision repair)
GGR (global genome repair) factors
TEF_06010
MMR (mismatch excision repair)
DNA ligase
TEF_06010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TEF_06010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HalX
HHH
Motif
Other DBs
NCBI-ProteinID:
ANK80397
LinkDB
All DBs
Position
1308734..1310809
Genome browser
AA seq
691 aa
AA seq
DB search
MSDRAPIEAREEHAGLVKQIREHDRRYYQEDAPTVTDAEYDRLRARLEELEAEHPDLVTL
DSPTQSVGAAPASGFGKVTHARPMLSLGNAFSEEDVADFIQRVRRFLNLDAETEIALNAE
PKIDGLSASLRYEKGRLVTGATRGDGYEGEDVTANVRTVGDIPNELPNGAPDVFEVRGEV
YMSKTAFAELNRAQAEAGRQIYANPRNAAAGSLRQIDASVTANRKLAFFAYSWGEVSALP
ADTQSGVLAALEGWGFTINPLTRICRGVDEIMALYREIEAGRGELDYDIDGVVYKVDRLD
WQDRLGYVSRSPRFAIAHKFPAEKAMTVLKGIDIQVGRTGALTPVARLEPVTVGGVVVSN
ATLHNEDEIARKDVRIGDTVILQRAGDVIPQILGVVEDKRPVDAKHYAFPETCPACGSHA
VRDVRADGQLDVVRRCTGGLICPAQAVERLKHFVSRNAFDIEGLGTRQIEMFFQEGVIRA
PADIFTLPGRNGELKLEEREGFGATSVRNLFAAIEERREIGLDRFLFALGIRHVGQQTAR
VLATNYLRLDDLLAAARAAAEGPESEAYQELVAIDGIGATVADALAEFAAEPHNREVLDA
LLAEVRVTDFEAPKRDTAVAGKTVVFTGTLETMTRDEAKARAESLGAKVSGSVSKKTDYV
VAGPGAGSKAKKAAELGVTTLTEQEWLDLLG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacagggcgccgatcgaagcgcgcgaggagcacgccgggctggtgaagcagatc
cgcgaacacgaccgccgctactaccaggaggatgcgccgacggtcacggacgccgaatac
gaccggttgcgtgcgcgtctggaggaactggaggcggagcatccggacctcgtgaccctg
gacagcccgacgcagagcgtgggcgcggcgccggcctccggcttcggcaaggtgacgcac
gcccgacccatgctctcgctgggcaacgccttttccgaagaggacgtcgccgacttcatc
cagcgcgtgcgccggtttctcaacctcgacgccgaaacggaaatcgcgctcaacgccgaa
ccgaagatcgacgggctgtcggcctcgctccgctacgagaaggggcggctggtcaccggc
gccacgcgcggcgacggctatgagggcgaggacgtcaccgccaatgtccgcaccgtgggc
gacataccgaacgaattgccgaacggcgcgccggatgtcttcgaggtgcgcggcgaggtc
tacatgtcgaagacggcctttgccgagctgaaccgcgcccaggccgaggcggggcggcag
atctacgccaatccgcgcaatgcggcggccggttcgctccgccagatcgacgcctcggtc
acggcgaaccggaaactcgccttcttcgcctattcctggggggaggtctcggccctgccc
gccgacacccagtccggcgtgctggcggcgctcgagggctggggcttcaccatcaacccg
ctgacgcgcatctgccgcggcgtcgacgagatcatggcgctctaccgggagatcgaggcc
gggcgcggggaactcgactacgacatcgacggcgtcgtctacaaggtcgaccgcctcgac
tggcaggaccggctcggctatgtcagccgctctccgcggttcgccatcgcccacaagttc
cccgccgaaaaggccatgacggtgctgaagggcatcgacatccaggtcggccggacgggc
gcgctgacgccggtggcgcggctggagccggtgaccgtcggcggcgtcgtggtctccaac
gcgacgctccacaacgaggacgagatcgcccgcaaggacgtccgtatcggcgacacggtg
atcctgcagcgcgccggcgacgtgatcccgcagatcctgggcgtggtcgaggacaagcgg
cccgtagacgcgaagcactacgcgtttcccgagacctgcccggcctgcggcagccacgcc
gtccgcgacgtgcgcgccgacggccaactcgacgtggtgcgccgctgcaccggcgggctg
atctgcccggcgcaggcggtggagcggctcaagcacttcgtctcccgcaacgccttcgac
atcgaaggcctgggcacgcggcagatcgagatgttcttccaggaaggcgtgatccgcgcc
ccggccgacatcttcaccctgcccggtcgcaacggggaactgaagctggaggagcgcgag
ggcttcggcgcgacatcggtgcggaacctgttcgccgccattgaggaacgccgcgagatc
ggcctggaccgtttcctgttcgccctcgggatccgccatgtcggccagcagacggcgcgc
gtgctggcgacgaactatctcaggctcgacgaccttctggcggccgcgcgggcggcggcg
gaaggaccggagtccgaggcctatcaggaactggtcgccatcgacggcatcggcgcgacc
gtcgccgacgcgctggccgagttcgccgccgaaccgcacaaccgcgaggtgctcgacgcg
ctgctggcggaagtgcgggtcacggatttcgaagcgccgaagcgcgacacggcggtcgcc
ggcaagaccgtggtgttcaccggcacgctggaaaccatgacccgggacgaggccaaggcg
cgtgcggaatcgctgggggcgaaggtttccggctcggtctcgaagaagaccgactacgtc
gtcgccggccccggggccggctccaaggcgaagaaggccgccgaactgggtgtcacgacc
ctgaccgagcaggaatggctcgatctcctgggttag
DBGET
integrated database retrieval system
