Rugosibacter aromaticivorans: PG1C_04495
Help
Entry
PG1C_04495 CDS
T03689
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03030
DNA replication
rbu03410
Base excision repair
rbu03420
Nucleotide excision repair
rbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PG1C_04495 (ligA)
03410 Base excision repair
PG1C_04495 (ligA)
03420 Nucleotide excision repair
PG1C_04495 (ligA)
03430 Mismatch repair
PG1C_04495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbu03032
]
PG1C_04495 (ligA)
03400 DNA repair and recombination proteins [BR:
rbu03400
]
PG1C_04495 (ligA)
Enzymes [BR:
rbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PG1C_04495 (ligA)
DNA replication proteins [BR:
rbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PG1C_04495 (ligA)
DNA repair and recombination proteins [BR:
rbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PG1C_04495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PG1C_04495 (ligA)
MMR (mismatch excision repair)
DNA ligase
PG1C_04495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PG1C_04495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AJP47927
UniProt:
A0A0C5IYU5
LinkDB
All DBs
Position
904431..906581
Genome browser
AA seq
716 aa
AA seq
DB search
MPDLSHVEQASALRAALERYNHAYYVLDTPTVPDAEYDRLFRQLQSLEAEYPELQTPDSP
TQRVGGKPLPAFGQVAHAVPMLSLNNAFSLDDVVAFDRRCREGLEKIAIDYACEPKFDGL
AIRLHYADGLLVQGATRGDGTIGEDVTQNLRTVRNIPLRLVGKDIPSQLDVRGEVVMLRA
DFAALNARQRARGEKEFVNPRNAAAGSLRQLDAKVTAQRPLYFFAYGVGDATAFSPVGLL
HGAPQEYLLRGVLPAPSSDGLLNQAAGNAEPPLDRTFHSELMDRLAGWGFTVAVERSVMR
GAAGLAAYYAEMAAARAQLPYDIDGVVYKVNDLVDQMQLGFVSRAPRFAIAHKFPAEEVL
TTVEAIEVQVGRTGALTPVARLAPVFVGGVTVTNATLHNEAEAQRKDVRVGDTVSVRRAG
DVIPEVVAVVLEKRPLSTEGSNESLYPPFILPKQCPVCGSAVEKLEDEAIARCTGGLFCP
AQRKQALLHFASRRAIDIDGLGEKIVEQLVDNALVKTPADLYRMDLASLANLQRMAEKSA
TNILAAIEKSKHTTLARFIFALGIRNVGEATAKDLARYFGNLHALMRASEDQLQQVPDVG
PVVAASIARFFAERHNIEVIEQLRAAGVHWTEGESSAAAVMPLAGKTFVLTGTLPTLSRE
TAKEMIEAQGGKVTGSVSSKTDYVVAGEDAGSKLIKAQELGVTLLNENQLKELLAQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgtctcatgttgaacaagccagcgccctgcgcgcagcgcttgagcgttat
aaccatgcctactatgtgctcgacacccccacggtgccggatgcggagtatgaccgcttg
tttcgccaattgcagtcactcgaagccgaataccctgaactgcagaccccggattcaccc
actcagcgcgtgggcggcaagcccttgccagcgtttggtcaggtagcgcatgccgtgccc
atgctgtcgctgaataatgcatttagccttgatgatgtggtggcatttgatcgacggtgc
cgggaaggcctggaaaaaattgcgattgactatgcctgcgaacccaagtttgatggattg
gctattcgtctccactatgctgatggtttactcgtacagggagccacgcgaggtgatggc
acgataggcgaagatgtcacgcagaatctgcgtacggtgcgcaatattcctttgcgttta
gtgggcaaggatattccgtcgcagttggacgtgcgcggtgaggtcgtcatgctgcgagca
gattttgcagcactcaacgcacggcagcgagcgcgtggcgaaaaggaatttgtgaaccct
cgtaatgccgcagctggtagcttgcgccagctggatgccaaagtcaccgcgcaacgcccg
ctgtatttttttgcctatggggtgggagatgctaccgccttctccccagtgggtctgctt
cacggcgcaccgcaagagtacctgcttcgcggcgtattgccagcgccgtccagtgacgga
cttttgaatcaggccgcagggaatgcagagccgcctttggacaggacttttcatagtgag
ctaatggatcgcttggcgggctggggctttactgtagccgtcgagcgcagtgtgatgcgt
ggtgcggcagggctggcggcgtattacgcagaaatggccgcagcgcgagcgcagctgcct
tacgatattgatggcgtggtgtacaaagtgaatgatctggtggatcaaatgcagcttggt
ttcgtctctcgtgcgccacgctttgccattgcgcataagtttcccgcagaagaagtgttg
acgacggtagaagccattgaagttcaagtgggtcgcacgggcgcgctgacgcctgtggcg
cgtctggcgccggtgtttgttggcggggtgacggtaaccaacgcgactttgcataacgaa
gcggaagcgcagcgcaaggatgtacgcgtaggtgataccgtcagcgtgcgtcgcgcaggc
gatgtgattccggaagtcgtggcggttgtccttgaaaaaaggccgctttccaccgagggc
agcaatgaatccttgtatccgccattcatcctccccaaacaatgtccggtgtgtggttcg
gcagttgaaaaacttgaagacgaagccattgcccgctgcaccggcggcctgttctgcccg
gcccagcgcaaacaggccttgctgcatttcgccagccgtcgcgcaatcgatattgacggg
ctgggcgaaaaaatcgtcgaacaattagtggataacgcccttgtcaaaacaccggctgat
ctatacagaatggatttagctagcctggctaatctgcaacgcatggctgaaaaatcagcc
accaacattctggccgccattgagaaaagcaaacacacgacgctggcgcgctttattttt
gcgttaggtatccgtaatgtgggtgaagcgactgcaaaagatctggcgcgctactttggt
aatctgcacgccttgatgcgcgcgagtgaagaccaattgcaacaggtgcccgatgtggga
ccggtggtagcggcctcgattgcccgtttttttgccgaacggcacaacatcgaagtcatt
gaacaactacgtgcggcgggcgtgcactggactgaaggtgagtccagtgcagcagcggta
atgccgctggcaggaaaaacatttgtgctgacaggcactttgccgacactctcgcgtgaa
actgccaaagaaatgattgaagcacaaggcggcaaagtgacaggttccgtctccagcaaa
acagattatgtcgtggcaggtgaagacgctggctcaaaactcatcaaggcacaagaatta
ggtgtcactctgctaaatgaaaaccaattaaaggagctgttagcgcaatga
DBGET
integrated database retrieval system
