Rhizobium brockwellii: RLCC275e_14340
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Entry
RLCC275e_14340 CDS
T09359
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rbw
Rhizobium brockwellii
Pathway
rbw03030
DNA replication
rbw03410
Base excision repair
rbw03420
Nucleotide excision repair
rbw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RLCC275e_14340 (ligA)
03410 Base excision repair
RLCC275e_14340 (ligA)
03420 Nucleotide excision repair
RLCC275e_14340 (ligA)
03430 Mismatch repair
RLCC275e_14340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbw03032
]
RLCC275e_14340 (ligA)
03400 DNA repair and recombination proteins [BR:
rbw03400
]
RLCC275e_14340 (ligA)
Enzymes [BR:
rbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RLCC275e_14340 (ligA)
DNA replication proteins [BR:
rbw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RLCC275e_14340 (ligA)
DNA repair and recombination proteins [BR:
rbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RLCC275e_14340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RLCC275e_14340 (ligA)
MMR (mismatch excision repair)
DNA ligase
RLCC275e_14340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RLCC275e_14340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
Lar_restr_allev
RNA_ligase
Nlig-Ia
HHH_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QJX06077
LinkDB
All DBs
Position
complement(2842111..2844267)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVR
FPELIREDSPSRHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEVRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITV
GGVVVTNATLHNADYISGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
AEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
TERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWSDLNAIE
GIGEVVARAIVEFYKEPRNVEVINRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgagctt
gaacggctggcaaaggagattgcgcatcacgatgcgctctatcacggcaaggaccagccg
gagatttcggatgccgattacgatgcgctgaagcgtcgcaatgatgcgctggaagtgcgg
tttcctgagttgatccgcgaagacagcccatcgcggcatgtcggtgcggcgccctccgtc
acgttctcgcccgtcacccacgcgcggccgatgctgtcgctcgacaacactttctcgcag
gaggacgtgcaggattttgtcgccggcgtctatcgcttcctcggccggctgccggaccag
tcgatcgcctttaccgccgagccgaagatcgacgggctctcgatgtcgatccgttatgaa
aacggtaggctggtgaccgctgcaacgcgtggcgacggcacgacgggggagaacgtcact
gccaacatccggaccatcgccgagatccccaacgagctgccgaaaggcgtgcccgctgtc
gtggaggtccgcggcgaggtctatatggccaagagcgacttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaatacggctgctggatcgctg
cgccagctcgacgccaaggtgacggcgagccgcaagctgaaattcttcgcctacgcctgg
ggcgagatgtcggagatgccggccgatacgcaatttgccatggtgcagaccttcaaggac
tggggtttcccggtcaatccgctgatgaaacggttgaactcggtcgccgacatcctggcg
cattatgacgagatcggcctcgagcgcccggatctcgactacgacatcgacggcgtcgtc
tataaggtcgacagtctcgagctgcaggcccggcttggcttccgctcgcgttcgccgcgc
tgggcgacggcgcacaagtttcctgccgaacaggccttcacgatcgtcgagaatatcgac
atccaggttggccgcaccggcgctttgacccctgtcgcgcgattgacgccgatcacggtc
ggcggcgttgtcgtcaccaatgcgacgctgcacaacgcggattacatcagcggcatcggc
aatagcggtgagcgcatccgcgacgacgagcacgatatccgcatcggcgataccgtcatc
gtacagcgcgcaggcgatgtgataccgcaggtcctcgacgtcgtcatggaaaagcggccg
gccgaggccaggccttatgaatttccgaagacctgcccggtctgcggttcgcatgccgtg
cgtgaaaggcatgagaagaccggcaagctcgattcggtcacccgctgcaccggcggcttc
atctgcagggcgcaggcgacggagcatttgaagcacttcgtttcgcgcaacgctttcgat
attgaagggctcggttcgaagcagatcgacttctttttcgaaaacgaggacgcgtcgctg
cagatccgcactgcacccgatatcttcacgctggagaagcgtcagcagcaatcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagtgtcggcaagctctatgcggcgatc
accgaacggcgcagcatcgcgctccaccgcttcatctacgcgctcggcatccgtcatgtc
ggggagaccacggcgaagctcttggcgcgctcctatggcacctatgcggcctttgaaacc
gcgatgcgagaggccgaggcgctttccggcgacgcctggagcgatctcaacgccatcgaa
ggtatcggcgaggtcgtggcgcgcgccatcgtcgaattctacaaggagccgcgcaatgtc
gaggtgatcaaccgactgcttgaggaagtgacgcccgaggaggccgaacaaccgaagacg
gcaggcagcccggttgccggtaagaccgtggttttcaccggctcgctggaaaagtttacc
cgcgacgaggcaaaggcgagggcggaaagcctcggcgccaaggtggcgggatcggtctcg
aagaagaccgacatcgtcgtcgccggccccggcgccggctccaagctcgacaaggcgcgc
gaactcggcgtgcagacgatggacgaggacgaatggctggcactgatcagcgggtga
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