Rhodococcus pyridinivorans TG9: CEJ39_17770
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Entry
CEJ39_17770 CDS
T05830
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03030
DNA replication
rby03410
Base excision repair
rby03420
Nucleotide excision repair
rby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEJ39_17770
03410 Base excision repair
CEJ39_17770
03420 Nucleotide excision repair
CEJ39_17770
03430 Mismatch repair
CEJ39_17770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rby03032
]
CEJ39_17770
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_17770
Enzymes [BR:
rby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CEJ39_17770
DNA replication proteins [BR:
rby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CEJ39_17770
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CEJ39_17770
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEJ39_17770
MMR (mismatch excision repair)
DNA ligase
CEJ39_17770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEJ39_17770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
UPF0758_N
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AWZ25768
LinkDB
All DBs
Position
complement(3769440..3771548)
Genome browser
AA seq
702 aa
AA seq
DB search
MSEPTDAPITAPPEARERWQDLAEQVREHQFRYYVRDAPIISDGQFDALLGELQALEDQY
TELRTPDSPTQLVGGGFATEFGAVEHLERMLSLDNVFDEDELRAWLSRAEVETGTHPDYL
CEVKIDGVALSLVYENGKLVRAATRGDGRTGEDVTLNARTIDDVPEKLTGTAEYPIPTLL
EVRGEVFFRLEDFQTLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMYCHGYG
RMEGFEPRSQSDAYAAFAAWGLPVSPHTVRVQGAEAVVERMRYWGEHRHDIEHEIDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVERKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEYAFEMLTQCP
ECGTTLAPAKEGDVDLRCPNSRSCPAQLRERVFHVSGRGAFDIEALGYEAATALLEGKII
ADEGDLFSLTKEDLERIPFFRTTKGVLSKNGERLLQNLDKAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRAASVDELAAVEGVGPTIAAAVTDWFTVDWHVAIVDKWAAAGVR
MADERDESIPRTLEGLSIVVTGTLAGFSRDQAKEAVLARGGKAAGSVSKKTAFVVIGDNP
GSKADKAADLGVPVLDEDGFRILLDEGPDAARAYLEGREGEN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaccgacggacgcacccatcaccgctcctccggaggcgcgtgagcgctggcag
gatctcgccgaacaggtgcgcgagcatcagttccgttattacgtgcgcgacgcccccatc
atctccgacggtcagttcgacgcgctcctcggcgaactgcaggcactcgaggatcagtac
accgaactccgcacgccggattcgcccacccagctggtcggcggcggcttcgccaccgaa
ttcggtgccgtcgagcatctcgaacggatgctcagcctcgacaacgtcttcgacgaggac
gaactgcgcgcgtggctctcacgcgccgaggtcgagaccggcactcaccccgattatctg
tgcgaggtgaagatcgacggcgtggcgctcagcctcgtctacgagaacggcaaactcgtc
cgcgcggccacccgcggcgacggacgcaccggggaggacgtcaccctcaacgcccgcacg
atcgacgacgttcccgaaaagctcaccggcaccgccgaatacccgatcccgacgttgctc
gaagtgcgcggcgaggtgttcttccggctcgaggacttccagaccctcaacgccgggctg
gtagccgaaggcaagccgcccttcgcgaatccccgcaattccgccgccggttccctgcgg
cagaagaacccggccgtcaccgcgcgccggcgtctgcgcatgtactgccacggctacggc
cgcatggagggcttcgaaccccgctcgcaatccgacgcctacgcggccttcgcggcctgg
ggcctgcccgtctcaccgcacactgttcgcgtgcagggcgccgaggcggtcgtcgagcgg
atgcgctactggggcgaacaccgccacgacatcgaacatgagatcgacggcctggtggtc
aagatcgacgacatggggctgcaccgacgcctcggtgccacgtcccgcgccccacggtgg
gcgatcgcctacaagtacccgccggaggaggtcaccaccaagctcctcgacatccgcgtc
agtgtcgggcgcaccggacgcgtgacccccttcgcctacatggagccggtcaccgtcgcc
gggtccaccgtctcgctggcgacgctgcacaacgcgtccgaggtggagcgcaagggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgacgtgatcccggaggtcctcggc
ccggtcgtcgacctgcgcgacggttccgagtacgccttcgagatgctcacgcagtgcccc
gaatgcggtaccaccctcgccccggcgaaggagggcgacgtcgacctgcgctgccccaac
tcgcggtcgtgcccggcgcaattgcgcgagcgggtcttccacgtctcgggcaggggagcg
ttcgacatcgaagccctcggctacgaggcggccacggcgctgctcgaggggaagatcatc
gccgacgagggcgacctgttctcgctcacgaaggaagacctcgaacgcatcccgtttttc
cgcaccaccaagggcgtgctgtcgaagaacggcgaacgtctgctgcagaacctcgacaag
gcgaaggaacagccgctctggcgcgtgctggtcgccctgtccatccggcacgtcggaccg
accgctgcgcgtgcgctggccaccgagttcggcagcctcgaccggatccgggccgcgtcc
gtcgacgagctcgcggccgtcgagggcgtcggaccgacgatcgccgcggcggtgaccgac
tggttcaccgtcgattggcacgtcgcgatcgtcgacaagtgggcggcagcgggtgtgcgg
atggccgacgaacgcgacgaatcgatcccgcgaaccctcgaaggactgtcgatcgtggtt
acgggcacgctcgcgggattctcccgcgaccaggccaaggaggccgtcctcgcgcgcgga
ggcaaggccgccggatcggtgtcgaagaagacggctttcgtcgtcatcggcgacaacccg
ggttcgaaggccgacaaggccgccgatctcggagtacccgtgctcgacgaggacggtttc
cggatcctgctcgacgaggggcccgacgccgctcgcgcctatctcgaagggcgcgaaggg
gagaactga
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integrated database retrieval system
