Riemerella columbina: NYR17_03305
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Entry
NYR17_03305 CDS
T09247
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rcl
Riemerella columbina
Pathway
rcl03030
DNA replication
rcl03410
Base excision repair
rcl03420
Nucleotide excision repair
rcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYR17_03305 (ligA)
03410 Base excision repair
NYR17_03305 (ligA)
03420 Nucleotide excision repair
NYR17_03305 (ligA)
03430 Mismatch repair
NYR17_03305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcl03032
]
NYR17_03305 (ligA)
03400 DNA repair and recombination proteins [BR:
rcl03400
]
NYR17_03305 (ligA)
Enzymes [BR:
rcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NYR17_03305 (ligA)
DNA replication proteins [BR:
rcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NYR17_03305 (ligA)
DNA repair and recombination proteins [BR:
rcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NYR17_03305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NYR17_03305 (ligA)
MMR (mismatch excision repair)
DNA ligase
NYR17_03305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NYR17_03305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
RNA_lig_T4_1
PTCB-BRCT
HHH
Auto_anti-p27
5_3_exonuc
Dna2
RNA_ligase
OAS1_C
Zn_ribbon_TFIIB
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WKS95780
LinkDB
All DBs
Position
complement(690720..692732)
Genome browser
AA seq
670 aa
AA seq
DB search
MTTDIQKRIQELSQRLHQHNYQYYILDQPTISDFEFDALLKELQDLEAQYPEFLDPNSPT
QRVGGGITKHFPTVTHEFRMYSLDNSYDFDDLEDWQKRLEKTLETSQISYVAELKYDGAS
ISILYQNGQLQQAVTRGDGLQGDDITANVKTISDIPLKLHGDFPDQFYIRGEIYLTKKQF
AEINKGREEEGLEPFMNPRNTASGSLKMQDSREVRRRKLSAVLYQAVSTADLAATHWELL
QQTQSWGFKVSQHAQLCQNIEEVKAFINHWEHQRHHLDFEIDGIVIKVNDFKQQQQLGYT
AKSPRWAMAYKFKAEKVETQLESIAYQVGRTGAITPVANLKPVLLAGTVVKRASLHNEDI
IKKLNLHHHDFVYVEKGGEIIPKIVGVNLDKRTPQSQEVQYITHCPECGTPLVKIEDQAI
HYCPNEEHCPPQVIGKMIHYVSRKALNIENLGAETIEQLYHAGLIKNVADFYTLTKPQLL
PLERMAEKSAQNILDGIEKSKNIPFEKVLYGLGIKHIGETVAKKLVKNFPSIEVLQAASV
EDLVEVEDIGVKIAESLVDYLKNPEHILLLQRLKEYGVQLEKQETETVLDSEVLDGKTFL
FTGKLSLFTREQAEAMVERHGGKNISAVSKNLNYLVVGEKAGSKLKKAQALGSVIILDEQ
SFLDMIVAQE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagacatccagaaacgcatacaagagctgagccagcgcctccatcagcacaat
tatcagtattatatattagaccaacccaccatttctgattttgagtttgatgctttattg
aaggaactccaagatttggaagcgcaatatcctgaatttttggatcccaactcaccgaca
cagcgtgtgggcggcggcattaccaagcatttcccaacggtaacccacgagtttagaatg
tattctctggataattcttatgattttgatgatttagaagactggcaaaagcgcttagag
aaaactctggaaacctcacaaatcagctatgtggcggaactcaaatacgatggcgcttct
atctccattctgtatcaaaatgggcaacttcaacaggcggttacccgtggcgatgggctt
cagggcgatgatatcactgcaaatgtgaaaaccatctctgatattccgctaaaactccac
ggcgatttccctgatcagttctacatccgtggcgaaatctacctcaccaaaaagcaattt
gcagaaatcaacaaaggtagagaggaagaaggcttggaaccctttatgaacccacgaaat
acggcttcggggagccttaaaatgcaagatagccgagaggtaaggcgcagaaaactctct
gccgtactctaccaagcggtcagcactgccgacctcgctgccacgcattgggaactttta
caacagacccaatcttggggctttaaggtctctcagcacgcccaactttgccaaaatata
gaagaagtaaaagccttcatcaaccattgggagcaccagcgccaccatttggattttgag
attgatggcatcgtgatcaaagtgaatgatttcaagcaacaacagcaattgggctatact
gccaaatcgccgcgctgggctatggcatataaatttaaagccgaaaaagtggaaacacag
ctggaatccattgcctaccaagtgggcagaacgggtgccataacgcctgttgccaatctg
aaacctgtgcttttagctggaacggtggtcaagcgggcatctctacacaatgaggacatc
atcaaaaaactcaacctccaccaccacgattttgtgtatgtagaaaaaggcggcgagatt
attcctaaaatcgtgggtgttaatttagataaaagaaccccacaaagccaagaggttcaa
tacattacccactgtccagaatgcggaacgccattggtaaaaatagaagaccaagccatc
cattattgccctaacgaagagcactgccctccgcaggttatcggcaagatgatacattat
gtctcccgaaaagccctcaacattgaaaacttgggtgccgagaccatagagcaactctac
cacgctgggctcatcaaaaatgtggcagatttttatactttaacgaaacctcaactcttg
cctttggagcgtatggctgaaaaatcggcgcagaacatcttagacggcattgaaaaatct
aaaaatattccttttgaaaaagtactctacggcttaggcatcaagcatatcggcgaaacc
gttgccaagaaattggtcaaaaatttcccttccatagaagtactacaagctgccagcgtg
gaagaccttgtagaagtggaagacatcggggtaaagattgcagaaagtttggtggattac
ctcaaaaatcctgagcatattctcctcctccaacggctcaaagaatacggcgtacagctg
gaaaaacaagaaacggaaaccgttttagacagcgaggttttagatggtaaaactttcctc
ttcacagggaaattatccctattcacacgggaacaagccgaagcgatggtggagcgccac
ggcggcaaaaatatttctgccgtttccaaaaacttaaactatttggtggtcggcgagaaa
gcgggtagcaaactcaaaaaagcgcaagctttgggcagtgtcattattttagatgaacag
agtttccttgatatgatcgtcgctcaggagtag
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integrated database retrieval system
