Rosa chinensis (China rose): 112170002
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Entry
112170002 CDS
T06020
Name
(RefSeq) ABC transporter I family member 19 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112170002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112170002
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112170002
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
AAA_28
AAA_15
AAA
SMC_N
AAA_23
NACHT
AAA_25
PduV-EutP
Zeta_toxin
AAA_18
AAA_5
SRP54
AAA_24
Arf
AAA_22
AAA_33
AAA_30
ATP-synt_ab
AAA_13
Motif
Other DBs
NCBI-GeneID:
112170002
NCBI-ProteinID:
XP_024162913
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All DBs
Position
6:complement(51029577..51032086)
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AA seq
283 aa
AA seq
DB search
MAEQEAETSSGIRVSGMQFAYDAQPPLFYDFSLNIAPGSRCLLVGANGSGKTTLLKILAG
KQMVGGRDVVRVLNGSAFHDTHLVCSGDLAYLGGSWSKTVGCAGELPLQGDFSAEHMIFG
VEGTDPVRREKLIELLDIDLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVV
ARMDLLDFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGELKRAQKLLEVEELKSS
VNLLSVVESWLRAETKQEKKKPKNPAQTSSPFGMSSRHMAYYR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaagaagcagagacctcgagcggtatcagagtcagtggcatgcaattcgcg
tacgacgcgcaacctccgctcttctacgacttcagcctcaacattgctcccggatcacgg
tgccttctcgtcggcgccaacggatccgggaagactactctgctgaagattttggcgggg
aagcaaatggtgggagggagggacgtggtgcgggtgttgaatggttcggcttttcatgac
actcatttggtctgtagcggcgacttggcctatttgggaggctcctggagcaaaactgtt
ggctgtgctggagagctgcccctccaaggagacttctctgctgaacatatgatatttgga
gtggaaggaactgatccggttaggagagaaaagttgattgagctgcttgatatagatctc
aagtggcgaatgcataaagtatctgatgggcagcgacgccgagtgcaaatctgcatggga
cttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgtt
gctaggatggacttactagatttcttcaaggaagaatgtgagcagagaggagctacaatt
gtatacgcaactcatatctttgatggcttggaaacatgggcaacccatttagcttacatc
caagatggtgagctaaagagagctcagaagttattggaggttgaagagttgaagagttca
gtcaatctgctttctgttgtcgaatcctggcttcgtgctgaaaccaagcaggagaaaaag
aaacccaaaaatcctgcccaaacgtcatctccttttggtatgtcatcaagacacatggcg
tattaccgctga
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