Rosa chinensis (China rose): 112186891
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Entry
112186891 CDS
T06020
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112186891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112186891
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112186891
Complex C
U5 SnRNP specific factors
112186891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
EF-G_D2
Roc
SOI
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
112186891
NCBI-ProteinID:
XP_024181216
LinkDB
All DBs
Position
2:complement(42610606..42616857)
Genome browser
AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREEEDEELPDRLEDRGAASDGEDAQNGWMTASNDVD
MDNQVVLAEDKKYYPTAEEVYGEDVETLVMDEDAQPLEQPIIKPVRNIKFEVGVKDSSTY
VSTQFLVGLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFDANSDKHMRYTDTR
IDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTASLRLADGAVLIVDA
AEGMMVNTERAIRHAIQESLPIVVVINKVDRLITELKLPPRDAYFKLRHTLEVINNHITA
ASSTAGHVQVIDPVAGNVCFASATAGWSFTLQSFAKLYVKLHGIAFDADQFASRLWGDMY
YHPEDRAFRRKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNAAY
KLNVRPLLRLACSSVFGSASGFTDMLVQHIPSPKDAATRKVDHTYTGPKDSLIYKAMKTC
DPNGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQSVRVLGEGYSPDDEEDMTVKEVT
KLWLYQARDRIPIAEAPPGTWVLIEGVDASIMKTATLCNESYDEDVYIFRPLQFNTLPVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIEKGVVSID
WSRRDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIATEPLHRGSGQIIPTSRRVAYSSFLMATPRLM
EPVYYVEIQTPIDCISAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
ISKFFDEAMMVELAQQEADIHQQMI
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtctatacgacgagttcgggaactatataggacccgaaatcgagtcggac
caggagagtgatagggaggaagaagatgaagagcttccggataggttagaagatagaggt
gcggcatccgacggtgaggatgctcagaatgggtggatgactgcctctaatgatgtagat
atggacaaccaggttgttcttgctgaggataagaagtattatcctacagcggaggaggtt
tacggcgaagatgttgagaccttggtcatggatgaagatgcacagccccttgaacagccg
attatcaagcccgttcggaatattaagtttgaggttggtgtcaaagactcctcgacgtat
gtgtccacgcagtttcttgttggtcttatgtcgaaccctgctctggttcggaatgtggca
ctggtggggcacttgcagcatgggaagacggtgtttatggatatgttggtggaacagact
catcatatgtctacttttgatgcaaatagtgataagcacatgaggtacactgatacgagg
attgatgaacaagagaggaggatatctattaaggctgttcccatgtcccttgtacttgag
gatagcaattcaaagtcgtacctgtgcaatgtcatggatactcctggtcatgtcaatttc
tctgatgaaatgactgcttcacttaggctcgctgatggtgctgtcctcattgttgatgcg
gcagaagggatgatggtaaatactgagagggctatacgccatgcaatccaagagagccta
ccaattgtggttgtaatcaacaaggttgacaggttgataacagaacttaaattgccccca
agggatgcttacttcaagcttaggcatactctggaagtgattaataaccacataacggct
gcctcttcaactgctggtcatgtacaagttattgatcctgttgctggaaacgtatgcttt
gcaagcgctactgcaggatggtcgttcacgttgcaatcatttgcgaagctatatgttaag
cttcatgggatcgcttttgacgcggatcagtttgcttctcgtctatggggagatatgtac
tatcatcctgaggacagggctttcaggagaaaaccccctgcaagtggaggagaaaggtcg
tttgtccagtttgtgcttgaacccctgtataaaatttatagccaggtgattggagaacat
aaaaagagtgttgaggcaactcttgctgaacttggtgtcacccttagcaatgcagcttac
aaattgaatgttaggcctctactgaggttggcttgtagctcggtttttggatctgcctcg
ggcttcactgatatgcttgtgcaacatattccttctcctaaagatgctgcaacaaggaaa
gtcgaccacacatatactggaccgaaagactctttgatttacaaagccatgaaaacttgt
gatcccaatggcccgttgatggtaaatgttaccaagctgtatcccaagtccgattgtagc
gtgttcgatgcatttggtagggtatacagtggtaagattcagacaggacagtcagtacga
gtattgggagaagggtattcacctgacgatgaggaggacatgacagtcaaagaagtaacg
aagctatggctttaccaagcgcgagataggatacctatagctgaagctccacctggtact
tgggttctcatcgaaggtgtggatgcttccataatgaaaactgccactctgtgtaatgag
agttatgacgaggatgtatacatattccgccctcttcagttcaatacactgccagtggtg
aaaacggcaactgagcctctaaatcccagtgagttgccaaaaatggtggagggtcttaga
aagatcagcaagagttatcctcttgccatcaccaaagttgaggagtctggggagcacaca
atcttaggtacaggagaactgtacttggattccatcatgaaggacctcagagagctctac
tccgaagtagaagtcaaggttgcagatcctgttgtttcattctgcgaaacagttgtggaa
tcttcatcaatgaagtgttttgctgaaacaccaaacaagaagaataaaattactatgatt
gcagagccattagagagaggacttgcggaggacattgagaaaggtgttgtaagcattgat
tggtctaggagagatataggtaatttcttccagactaggtatgagtgggatgttcttgct
gcacggtccatatgggcattcggtcctgataagcagggacccaacatactacttgatgac
acactttcaagcgaagttgacaagagcttgctgaatgctgtgaaagactccattgtgcaa
gggtttcagtggggtgctcgagaaggacctctgtgtgatgaacccatcagaaatgttaag
ttcaagatagttgatgcaaggattgcaactgagccgttgcatcgtggatctggtcaaatc
attcccacatctcgacgtgtggcctattcatctttcctaatggcaaccccacggctcatg
gagccagtatattatgtggagatacaaacgccaatcgactgtatatctgcaatctacact
gttttatctcgcaggcgtggacatgttacagccgatgttcctcaacccgggaccccagct
tacattgttaaggcatttttacccgtcatagaatcgtttggttttgagacggacttgagg
taccatactcaaggacaggctttttgcctctcagtctttgatcattgggctatagttcct
ggggatcctcttgacaagagtattgttctgcgaccacttgaacccgcaccgattcagcac
ctggctcgtgaatttatggtcaagacaaggcgtagaaagggaatgagcgaggatgtgagc
atcagcaaatttttcgatgaggccatgatggtggaactggctcagcaggaagctgatatt
caccagcagatgatatga
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