Rosa chinensis (China rose): 112192061
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Entry
112192061 CDS
T06020
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
112192061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112192061
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
112192061
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
112192061
NCBI-ProteinID:
XP_024187350
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All DBs
Position
3:complement(2942907..2952132)
Genome browser
AA seq
986 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEHPREDSNGVPRPIDVSRPNPNGYEFDNLYLDMNGII
HPCFHPDGRPAPATYQDVFKSIFDYIDHLFTLVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLKKEFEMEGTSLVSKEKPETLDSNVITPGTPFMAVLSVALQYYIQ
FKLNNDRGWRSTKVILSDANVPGEGEHKIMSYIRSQRSLLGSDPNTRHCLYGLDADLIML
ALATHEVHFSILREVITLPGQQEKCFLCGQVGHLAAECRGGDDGAADETPVHKKKYQFLN
IWVLREYLEYELDIPNPPFQLNFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMH
IYRREFSAMGGYLTDAGEVLLDRVEHFIQSVAVYERQIFQKRARIQQAFENNEERQRNRR
EACEELPAPVVEKVVDKVKLGEPGYTERYYAEKFQVSKPEEIEKVKKDLVLKYVEGLCWV
CRYYYQGVWSWQWYYPYHYAPFASDLKDLNELEITFFLGEPFKPFDQLMGTLPAASCSAL
PEKYRNLMTDPSSPICHFYPSDFEIDMNGKRFAWQGIAKLPFIDEKKLLAQTRKLESTLT
EEEKARNSVMLDLLYVYPSHPLASEIIFYYHLCYLCPPHERLPRAINTNLSGGMNGFLWL
SERNGFRNVIPSPVHGFPNIDYNEVLNVTYLSPAAQKHIPEPPEGVIMPRKVVKPTDIKP
PPALWHEDNGPRRYQNRDRPQIPGAIAGTVLGEAAHRLVKNTLNLRASNPSSGFWDQSQP
LRASSGNYNGNYPVNRPRPAGPSGYERGFREEPNYGNSFNPQGIMARPRAPYSNGVQGDR
QSFRTQERTQYQEQSFRGQERIQYQEQYRNMRTGMSSLTMEGSVRTRSPVVAQPGMPNSG
YSTNPHQQFVPNSGYSTNPHQQFVQNMGALPPPPTKWINKEFGANGGIYGRHQETGYGGP
YEQQVKKVYQVKTRPPQDLPNSGNHE
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccccgcgttttaccgctggctggcggatcggtacccgctctcgatcgtcgac
gtggtggaggaacaccccagggaggactccaacggcgtgccgagaccaatcgacgtctcg
aggccaaaccctaacggctacgagttcgataacctttacctcgacatgaacggcattata
catccctgttttcatcccgacggccgacctgcccctgctacttatcaggacgtattcaag
tcaatatttgactacattgatcatctcttcacgctggtgcgcccaagaaagcttcttttt
atggcgattgatggggtagcaccaagagctaaaatgaatcagcaacgctctcgacgtttc
agagctgcaaaagatgcggctgaggcggaagctgaagaggaaagactaaagaaagaattt
gagatggaggggacatcattggtttctaaagagaaacctgaaactttagattcaaatgtt
attactccaggcactccatttatggcggtgctctcagtagcacttcaatattatatacaa
tttaaattgaacaatgaccgtggttggcggtctacaaaggttattctttctgatgccaac
gttcctggcgagggagagcacaaaataatgtcatacatacgatcgcaacgcagtcttttg
ggttctgatcctaacactcggcattgtctttatggtctggatgcagatctaattatgctt
gctttagctacacatgaggttcacttctcaatattaagagaggtgattactcttccaggt
caacaggaaaaatgttttctttgtggacaagttggtcatctggcagctgaatgtcgtggt
ggagatgatggtgcggccgatgaaactccagttcacaagaagaaatatcagttcctcaac
atctgggtgttgcgtgaatatttggaatacgagctggacatacccaatcctccttttcag
cttaattttgaaaggatagtggatgattttgtgtttatgtgcttttttgttggcaatgat
tttcttccacatatgccaacattggagatcagagagggtgcaattaacttattgatgcat
atttatagaagagaattttctgctatgggtggctatctcactgatgcgggtgaggtattg
ttagatagagtagagcattttatccagtctgttgctgtctatgagcgccaaatttttcaa
aagcgggctcgaattcagcaggcttttgagaataatgaagagagacagagaaatagaaga
gaggcttgtgaagagctaccggctccagtggtagaaaaggtggtggacaaggttaaattg
ggggagccgggatatacagaaaggtattatgctgagaagtttcaagtatcaaagccagag
gagattgaaaaagttaaaaaagacttggttctaaaatatgtagaaggcttatgctgggtc
tgccgatattactaccaaggggtctggtcatggcaatggtattatccataccattatgct
ccttttgcttctgatctaaaagatctaaatgagttggaaataacattttttttgggagag
ccatttaaaccctttgatcagctcatgggaaccttaccagctgcaagttgtagtgctctt
ccagaaaaatacagaaatttgatgactgatccgtcatctcccatttgtcatttctaccca
tctgattttgagattgacatgaatggcaagcgctttgcatggcagggcattgccaaattg
ccattcattgatgagaagaaattgcttgctcagacaaggaagcttgaaagcactttaacg
gaggaagagaaagctcgaaatagcgtgatgcttgatttgctttatgtctatccttctcat
cctttggcgtcggagattattttctactaccatttatgttatctgtgtcccccacatgaa
agattgccacgtgcgataaatactaatcttagtggtggaatgaatggattcctttggtta
tctgagaggaatggctttagaaacgtaatcccttcccctgtgcatggttttcccaacata
gactataacgaagtcttaaatgttacatatcttagccctgcagctcaaaaacacatccca
gaacctcccgagggtgtgatcatgcccagaaaggttgtaaaacctacggatatcaaacct
ccccctgcgttatggcatgaagacaatggtccccgacgctaccaaaacagagataggcca
caaatacctggagcaattgctggaactgtgttgggagaagcagctcatcgacttgtcaag
aacacactaaatcttagagctagtaatccatcctctggattttgggatcaatcacagcct
ttaagagcttcttctggaaactacaatggaaactatccagtcaacagaccaagaccagct
gggccatctgggtatgaaaggggtttccgtgaagaaccaaattatggaaattcttttaat
cctcagggcatcatggctaggcccagagctccttactcaaatggtgtgcagggtgacaga
cagagttttaggacacaagaaagaacacagtatcaagagcagagttttagaggacaagaa
agaatacaatatcaagaacagtaccgcaacatgagaactgggatgtctagtttaacaatg
gaaggaagtgtgagaaccaggtctcctgtagtggcgcaaccagggatgccaaattcagga
tactccacaaacccacatcagcagtttgtgccaaattcaggatactccacaaacccacat
cagcagtttgtgcagaacatgggcgctcttccaccgccacctacaaagtggatcaacaaa
gaattcggtgccaatggtgggatttatggtaggcatcaggaaaccggatatggcggacca
tatgaacagcaggtgaaaaaggtttatcaggtaaagacacgtcctcctcaggacttgcca
aactctggaaaccatgagtga
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