Rosa chinensis (China rose): 112192990
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Entry
112192990 CDS
T06020
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04075
Plant hormone signal transduction
rcn04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112192990
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112192990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rcn03000
]
112192990
Transcription factors [BR:
rcn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
112192990
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
112192990
NCBI-ProteinID:
XP_040372553
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Position
3:7313115..7318125
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AA seq
753 aa
AA seq
DB search
MPLSELYRMARGRSDSNPDFEPVNDFVELVWENGQIMMQGQSSRARKSPTFNSLPSHTPK
NRDRDLGNGTNGKMGKFGSVDSVMDEIALSVPSVEMGLSDDDDMLPWLNYALDQPLQHEY
SHDFMPEISGVNANEISTNGNLASIEKRSSSSQIYRECSPNSTHGGALLEQRNVSKLSSI
SAAEVSRPRASTTHLYQMSSQQSQASIPSFRSIASDMVAVNTSSADHHAVCKNSIQASPA
GGFPGITTQKQNPPTPSNNNSTIVNFSHFSRPATLAKANLHNNGATSSSSLVRVEKIGNK
DKVSVATSSNPPESILIESSCSLLKESTSQCQDVMAPSSVDMKPTTSKSLEEPRTTKQSE
AAYQEDASKNDDTNSNHIPCESAIRALPDAEKTTEPVVASSVCSGNSVEKASDDPARALK
RKSRDTDDSECHSEDVEEESVRVKKVAHGRGTGSKRSRAAEVHNLSERRRRDRINEKMRA
LQELIPNCNKSTDYITSCLSWKFKYKLMSSVIWLCKVDKASMLDEAIEYLKTLQLQVQIM
SMGAGLYMPQMMLPPGMQHMHAPRMAHFSHMGVGMGMGLGMGFGMGMPDMNGGSSGYPML
QVPPMQGAHFPGSPMSGHTAFNGMVGANLQMFGLPGQGVPIPMQRAPLVPVSGGPFMKSA
VRPNGCGAGGPVEPAQASSSKDSVQNMNSQVMQNTNTNSSMNQTSNQCQTTNEVFGQSAF
VQNNVQASDVSTSGANRSTNGKDQVLSRPASYD
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatcggagctgtatcgaatggccagagggaggagtgattcgaatccagatttc
gaacctgtgaatgattttgttgaactggtatgggaaaatgggcagattatgatgcaaggt
caatccagtagagctagaaagagtccaacttttaacagcttaccatctcacacccccaag
aatcgagatagagatttaggaaatggaaccaatgggaagatggggaaatttgggtcagtg
gactctgtgatggatgaaattgcattgtcggtgccatctgttgaaatgggtttgagtgac
gatgatgacatgttgccttggttgaattatgcccttgatcaacctttacaacatgaatat
agccatgattttatgcctgaaatatctggtgtcaatgcaaatgagatttccaccaatggc
aatctcgcatcaatcgagaaaaggagtagttctagtcagatatatagggagtgcagcccc
aattctacccatggaggtgctcttttggaacaaaggaatgtatcaaaactttcttcaata
agtgctgctgaggttagcagacctagagctagtactactcacttataccagatgtcatca
cagcaatcccaagcatcaattccatcttttagatcaatcgcttcggatatggttgctgtt
aacacaagtagtgccgaccatcatgctgtttgcaagaattcaattcaggcttcacctgca
ggtggttttcctggcataacaacgcagaagcaaaatccgccgactcctagtaataataat
tcaaccatagtgaacttttcccatttctcacgacctgctactcttgcaaaagccaatctt
cacaataatggtgcaacgtctagctcgagtttagtaagggtggaaaagattggaaataag
gataaggtttcagttgcaactagtagcaatcctcctgagtcgatactaatcgaatcaagc
tgcagtttactgaaggagtcaacttcacagtgccaagatgttatggccccctccagtgtt
gatatgaaaccaaccacatctaagtctcttgaggaaccacgtactactaaacagtctgag
gctgcatatcaagaggatgcctctaagaatgatgacacaaactccaatcatattccttgt
gaaagcgcaattagggcacttccagatgctgaaaaaactacagagcctgtggttgcttct
tctgtttgctcaggcaatagtgtggagaaagcttcagatgatccagctcgtgcgttgaag
agaaaatctcgtgatactgatgactctgaatgccatagtgaagatgtagaggaagaatct
gtgcgcgtgaaaaaggtagctcacggtcgaggtacaggttccaagagaagcagagctgca
gaagtgcataacttatcagaaaggaggcgaagggatagaatcaatgaaaagatgcgggcg
cttcaagagctcatacccaattgcaataagagtacagattatataacttcgtgtttgtca
tggaagtttaaatataagttgatgtcttctgtaatttggttatgcaaggtggacaaagct
tcaatgcttgatgaggccattgagtatttgaagacacttcaactccaagtacagattatg
tcaatgggagctggtttgtatatgccacaaatgatgttaccaccaggaatgcaacacatg
catgcaccccgtatggctcatttctcgcacatgggtgttggaatgggaatgggattgggc
atgggttttgggatgggtatgcctgacatgaatggtggatcttctggttaccctatgctt
caggtgcctcctatgcaaggtgcacattttcctggttcaccaatgtcagggcatactgcg
ttcaatgggatggtaggagctaaccttcagatgtttgggcttcctggtcaaggagttccc
ataccgatgcaacgcgcacccttagttcctgtatctggagggccctttatgaagtcagct
gtacgaccgaatggttgtggtgcaggaggtcctgtagaaccagctcaagcttctagttca
aaagattcagtgcagaacatgaactctcaagtgatgcaaaacaccaacaccaatagctcc
atgaatcagacttctaatcagtgccagacaacaaatgaggtatttggacagtctgcattt
gtgcaaaataatgttcaagcgtcggatgttagtaccagtggagctaacagatctactaac
ggaaaagaccaagtgcttagtagaccagctagttatgactaa
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