Ruegeria conchae: K3740_08150
Help
Entry
K3740_08150 CDS
T08595
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rcon
Ruegeria conchae
Pathway
rcon03030
DNA replication
rcon03410
Base excision repair
rcon03420
Nucleotide excision repair
rcon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3740_08150 (ligA)
03410 Base excision repair
K3740_08150 (ligA)
03420 Nucleotide excision repair
K3740_08150 (ligA)
03430 Mismatch repair
K3740_08150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcon03032
]
K3740_08150 (ligA)
03400 DNA repair and recombination proteins [BR:
rcon03400
]
K3740_08150 (ligA)
Enzymes [BR:
rcon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3740_08150 (ligA)
DNA replication proteins [BR:
rcon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3740_08150 (ligA)
DNA repair and recombination proteins [BR:
rcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3740_08150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3740_08150 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3740_08150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3740_08150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UWR04637
LinkDB
All DBs
Position
1642510..1644762
Genome browser
AA seq
750 aa
AA seq
DB search
MSDTTAIAELTEDEARAELARLAKELQRANQLYHTEDAPEISDADYDALKRRNADIEARF
PELKRADSPSDQVGARVSDGFSKVTHAVRMMSLGNAFDDEDVVDFDRSIRKYLGLGEDAP
LEYTAEPKIDGLSLSLRYEHGELIQAATRGDGETGENVTANARTVSDIPHRIEGAPDIFE
VRGEVYMSHHDFEALNVRQIETGGKTFANPRNAAAGSLRQLDSEITRSRPLKFFAYAWGE
LSKPLAETQMGAIERLKALGFQVNALTRLCSTTGQMLDHYRAIEEQRAILGYDIDGVVYK
VDDLSLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYITGRDAKGGVIRDGKDIRIGDWVQVYRAGDVIPKISDVDLSKRPNDA
KPYSFPTTCPECDSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIEGLGAKQI
EMFHNDPVLPINTPADIFTLKERDAENLARLKNRDGWGETSASNLFAAIDDKRTIPFARL
LFALGIRHVGEVGARDLALFYREWDQMTASIDTARPAALAQRAADEAEDAERIAAIEEGR
RARVKEARDATVAKLNVPADAASAWTDMIGIDGIGTTLGLSLSDAFANPDERKAIDGLRS
HLTIVPPNASASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSQKTDLLVAG
PGAGSKAKKAADLGIETLDEDGWLQLIGDL
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccactgcaatcgcagaattgacggaagacgaagcacgtgcagaactggct
cggcttgccaaggagttgcagagggccaaccagctttatcacactgaagatgctccggaa
atatcagacgccgattatgatgccctcaaacgtcgtaatgcagatattgaggcacgcttt
ccggaactaaaacgtgcagacagcccttcggatcaagtaggggcacgagtttcagacggg
ttttccaaagtcacgcatgcagtgcgcatgatgtcacttggcaatgcctttgacgatgag
gatgttgtcgattttgaccgctcaatccgcaagtatctcgggttaggggaagacgctccg
cttgaatatacagccgagccaaagatcgatggcctctcgttatccttgaggtatgaacac
ggcgagctgattcaggcggcgacccgaggggatggtgagaccggagaaaacgtgaccgcc
aatgcgcgcaccgtgtcggatattccgcatcgaattgaaggtgctccagatatattcgag
gttcgtggtgaggtttacatgtctcatcatgatttcgaagcgctgaacgtccggcaaatt
gaaacaggtggaaagactttcgcaaatccgcgtaacgcagcagctggttcgctgcgccaa
ctggactcggaaataactcggtcacgtccactaaagttttttgcctatgcctggggcgaa
ctgtcgaaacctctggctgaaacgcaaatgggggcaatcgaacgactcaaagcgttgggc
ttccaagtcaacgcgcttacgcgtctctgttccacgacaggtcagatgctggatcattac
cgcgcgatcgaagaacagcgtgcgattttgggatatgacatcgacggggtggtctacaaa
gttgatgatctgagtctgcaatcccggttgggattccgttcgacaacgccccgctgggcg
atcgcgcataaatttccggccgaactggcctggacccggcttgaagcgatcgacattcag
gtgggtcggaccggagcgcttagcccggttgcacgtttgcatcctgtgactgtcggtggg
gtcgttgtgtcgaacgcgacgctgcacaatgaggactatatcacggggcgggacgccaaa
ggcggggttatccgcgatggcaaagacatacgcatcggcgattgggtgcaggtttatcgg
gcaggggatgtgatcccaaagatttcggatgttgatctgtcgaaacgaccgaatgatgcg
aaaccttattcctttccaacgacatgcccggaatgtgacagtgaggcaatccgcgaagaa
ggtgatgcggtacgccgatgcaccggggggttgatttgccctgcgcaggcggtggagaaa
cttaaacatttcgtgtcgcgcaaagccttcgatatcgaagggctcggagccaaacagatc
gagatgttccacaacgaccccgttctgcctatcaacacacctgccgatatcttcaccttg
aaagaacgggacgctgaaaatcttgcccgtttgaaaaaccgtgacggttggggagagacc
tcggccagcaatctgttcgccgcgattgatgacaaacgaaccattcccttcgctcgattg
ttgtttgcactcggaattcgccatgtgggcgaagtcggcgcccgggatttggccctattc
tatcgggagtgggatcaaatgaccgcgtcaatcgatacggcgcgacccgcagcacttgcg
cagcgtgccgctgacgaagcggaagatgcagaaaggatcgcagctatagaagaaggtcgg
cgcgccagagtcaaagaggcgcgggatgctacggttgctaagctaaatgtaccagcggac
gctgccagcgcttggacggatatgattggaattgatggcattggaaccacgctggggctg
tcgctgtctgacgcctttgccaacccggacgaacgcaaagcgattgatggactgcgcagt
cacttaaccatagttccgccaaatgcgtctgcatcggacagcccggttgcaggaaaaaca
gtcgtctttacaggaacgcttgaaaagatgacgcgcgccgaggccaaggcgcgtgccgag
gcgttgggcgccaaggtgtctggttcggtcagccaaaaaaccgatttgttggtggcgggt
ccgggtgcgggatcgaaggcaaagaaagcggccgatctgggtatcgaaaccctggatgaa
gacggctggcttcaactgatcggcgatctatga
DBGET
integrated database retrieval system
