Ricinus communis (castor bean): 8261831
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Entry
8261831 CDS
T01087
Name
(RefSeq) ABC transporter I family member 20 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8261831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8261831
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8261831
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
Arf
SMC_N
AAA
ORC-CDC6-like
nSTAND3
AAA_30
AAA_7
AAA_25
Zeta_toxin
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
8261831
NCBI-ProteinID:
XP_048236081
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Position
10:complement(4236503..4239249)
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AA seq
328 aa
AA seq
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MAVVECKQATIETKGLKFTYPGIDGHPPPGSKPLIDDFNLTLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLERSAFHDTVLTSSGDLCYLGGEWRREVAFAGFEVPIQMDVS
AEKMIFGVAGVDPQRRDELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEEWPSHIVYVAHGKLQLAMPMAE
VKEISNLSLMRTVESWLRKERDEERKRRKERKASGLPEFEKQMDGSRVTGDPARVAVRAL
NNGWAAGRLNSTVAGEENFFLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgtggagtgtaaacaggcaacaatagagaccaaaggtctgaaattcacgtat
ccaggaatcgacggacatccgccgcctgggtcgaagcctttgattgatgatttcaatctc
actctcaactcaggtgaccgatgccttcttgttggatccaatggcgctggaaaaactaca
atattgaaaatattgggagggaagcacatggtggagcctcatatggttcgtgtgttagaa
aggtctgcttttcatgacactgttttgacctcttctggtgatctctgctatcttggagga
gagtggagacgagaagttgcttttgctgggtttgaggttcccatacaaatggatgtttct
gctgaaaaaatgatatttggtgtagcaggagttgatcctcaaagaagagatgaactcatc
aaggtattagatgttgatctgtcatggaggatgcacaaggtttctgatggtcagagaagg
cgagtacaaatttgcatgggtctgctaaagccattcaaggtgcttctacttgatgagata
acagttgaccttgatgtgctagcaagggctgaccttctgaagttcctaaggaaagaatgt
gaagaaaggggtgccacgatcatttatgcaacacatatatttgatggtttagaggagtgg
ccttcacatattgtgtacgtggctcatggaaagttgcaattagcaatgccaatggcagaa
gtcaaggagatcagtaacttgtcacttatgagaacagtggagagctggctgaggaaagaa
agagatgaagagaggaagagaagaaaagaaagaaaggccagcggtcttccagaattcgag
aaacaaatggatggaagtcgagtcactggtgatccagctcgtgtagctgttcgtgctctg
aacaatggttgggcagcaggcagacttaattccactgttgcgggtgaagagaatttcttc
ctaagctcaaatagagttttgagataa
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