Ricinus communis (castor bean): 8262777
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Entry
8262777 CDS
T01087
Name
(RefSeq) transcription factor PIF1 isoform X2
KO
K16189
phytochrome-interacting factor
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
8262777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rcu03000
]
8262777
Transcription factors [BR:
rcu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
8262777
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
8262777
NCBI-ProteinID:
XP_002521150
UniProt:
B9S581
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Position
7:24398858..24408739
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AA seq
572 aa
AA seq
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MSHYVPDFEMDDDCAIPTSSTLVRPKKSITSTEDEFMELLWHNGQVVVQTQSLKKPQQQH
HKYDDAVIPVDQSNPRDVIRTAQEHHNHNNNSNNNNNNNNNTHNSNLFMQEDEMASWLHY
PINDTNFDQDFCADLLYPTSAAAACVTSTTTNTTTTTTTNNSFAPVRSLHNPEIRSQQPP
VSATATASRPPIPPTRRAQVVQNFAYFSRHRARDGANVAESGPSKVKPVARESTVVDSSE
TPEGIALDSRISEAAFGRSTSGGDNGGVGGAAAACGASSRGNNNNNNREMTTTCEMTVTS
SPGGSSASAEPPQPQRPPADDRKRKGREEETEYYHSEDVEFESADAKKQARGSTSTKRSR
AAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGC
SMVPMMFPGIQQYMPPMGMGMGIGMGMEMGMSRPMMPFPNVLSGAPLPTQAAAAAHLGPR
FHMPAFHMPPVPAPDPSRIQAASQSDPMVSAISTQNPNQPRLPNFVDPYQQYLGLQQLQI
PVPENQAMAQPSTSKPGANQGAENLDNHQSGT
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagccactatgttcccgatttcgaaatggacgacgattgcgctatccctacttcatca
accttagttcgccctaaaaaatcaatcacgtctacggaggatgagttcatggagcttctg
tggcataacggtcaggtagtcgtgcaaacccagtcgctaaagaaaccacagcaacagcac
cacaaatacgacgacgctgtcatacctgtagatcaatcaaaccccagagatgtcatccgt
acagctcaagaacaccataatcataacaataacagtaataataataataataataataat
aacacccataatagtaatctcttcatgcaagaagatgagatggcttcttggcttcattat
cctatcaacgacactaatttcgatcaagatttctgcgccgatctcctttatcccacctct
gccgccgctgcttgcgtcacttccaccaccaccaacaccaccacaacaacaaccacaaac
aacagcttcgctcctgtccgttcactccataatccagaaattcgctctcaacagccgccg
gtttctgctacagctacagcgtcaagaccaccgattccaccgacgagaagagcgcaggtt
gtgcagaacttcgcttacttttcaaggcacagagcgagagatggtgctaacgtagcagaa
tcaggaccgtctaaagtaaaacccgtagcaagagaatcaacggtggttgactcaagtgaa
acgccggaaggaatagcgttagattcgagaatttcagaggcagctttcgggaggagtact
tccggtggtgataacggcggcgtcggcggcgctgccgcagcctgtggtgcatcttccaga
ggtaataataataacaacaatagagagatgacgacgacatgtgaaatgactgtgacgtca
tcccccggtggttctagtgcaagcgctgaaccgccgcagccgcagaggccgccggctgat
gataggaagcggaaaggaagggaagaagaaacggaatattatcatagcgaggatgttgaa
tttgaatctgctgatgcaaagaaacaagctcgtggatcaacatctacaaagagatctcgt
gctgcagaagttcacaacctctcagaaaggagacggcgagaccggataaatgaaaagatg
agggctttgcaagagctcatacctcgatgcaacaagtcggataaagcttctatgttagat
gaggcaattgagtacctgaaatcgcttcagttacaagtacagatgatgtccatgggatgc
agcatggtcccgatgatgtttcctggcatccagcagtatatgccaccaatggggatggga
atgggaatcgggatgggcatggaaatgggtatgagtcgacctatgatgccatttcccaat
gttctatctggtgcacccctccccacacaggctgcagcagcagctcatttgggtccaagg
ttccatatgccagcttttcatatgccccctgtccctgcccctgatccatccagaatacaa
gcagccagccagtcagatcccatggtaagtgcaataagcacacagaatccgaaccaacca
cgattgccaaatttcgtcgatccttatcagcagtatcttggtctccaacagttgcagata
ccagtaccggagaaccaagcaatggcccagccaagtaccagcaagccaggtgccaatcaa
ggagctgagaatcttgataatcaccagtcagggacatga
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