Ricinus communis (castor bean): 8275706
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Entry
8275706 CDS
T01087
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8275706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8275706
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
8275706
Complex C
U5 SnRNP specific factors
8275706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
8275706
NCBI-ProteinID:
XP_002532501
UniProt:
B9T2N2
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All DBs
Position
3:24818593..24824286
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AA seq
992 aa
AA seq
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MDDNLYDEFGNYIGPEIESDQDSDREEEEEEDLPEKPHEDHDMVSDGDEEINGSNGWLTT
SNNDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGV
KDSSTYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTLFMDMLVEQTHHMPTFDMNSEKHM
RYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRIADGA
VLIVDAAEGVMVNTERAIRHAIQERLPIVLVINKVDRLITELKLPPKDAYHKLRHTLEVI
NNHITAGSSTAGSVQVIDPAAGNVCFASANAGWSFTLQSFAKLYLKLHGIPFDADKFASR
LWGDWYYHPDTRAFKKKSPASGGERSFVHFVLEPLYKIYSQVIGEHKKSVEATLAELGVT
LPNAAYKLNVRPLLRLACSRVFGSASGFTDMLVQHIPSAKNAAAKKVDHVYTGPKDSTIY
KAMVDCNPSGPLMVNVTKLYPKSDCSSFDAFGRVYSGQILTGQSVKVLGEGYSPDDEEDM
TVKEVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLCNVNYTYEDVYIFRPLQ
FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM
KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIE
NGVVSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKTLLSA
VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAQLPLDRGSGQIIPTSRRVAYSAFL
MATPRLMEPVYYVEIQTPIDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF
GFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIALRPLEPAPIQHLAREFMVKTRRRK
GMSEDVSINKFFDEAMVVELAHQAADIHQQMI
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctatatgatgagtttggaaactacattggtccggaaatcgagtctgac
caagatagtgaccgtgaggaagaagaagaagaagatcttccagagaagcctcacgaagat
catgatatggtgtctgatggtgatgaggaaattaatggttcgaatggatggcttaccact
tctaataatgatgttgatatggataatcagattgttcttgctgaagacaagaaatattat
ccgactgctgaagaggtttacggtgaagatgttgaaactttagttatggatgaagacgag
caacctcttgaacaacctattattaagcctgtgagaaacatcaagtttgaggttggtgtt
aaggattcgtcgacttatgtgtctagtcagttccttgttggtctcatgtcgaatccttct
ttggttcgtaatgttgctcttgtgggtcatttacaacatgggaagaccttatttatggat
atgttggttgagcaaacacatcatatgcctacatttgatatgaacagtgagaagcatatg
aggtatacagatacaaggattgatgagcaagaaagaaggatatctattaaggcagttcca
atgtcgcttgttcttgaagatagtaattcaaaatcatacctttgtaacatcatggatact
cctggtcatgttaacttctctgatgaaatgactgctgctcttaggattgctgatggtgct
gtgttgattgtggatgcggcagaaggagttatggtaaatacagagagggccatacgccat
gcaatccaggagcgcttgcctatcgtattagtgatcaataaggttgacaggttaataaca
gagcttaaactgcccccaaaggatgcttaccataagcttaggcatacgcttgaagttatt
aataaccacataactgctggctcttcaactgctggaagtgtccaagttatagatccggct
gctgggaatgtttgttttgcaagtgctaatgcaggatggtccttcactttgcaatcattt
gctaaactatatctcaaactccatggcatcccatttgatgctgacaaatttgcatctcgt
ctttggggagattggtattatcatccagataccagggctttcaagaaaaaatcccctgca
agtggaggtgaaagatcctttgtccattttgtgctggagcccctctacaagatatatagt
caagtgattggagaacacaagaagagtgtggaggctactcttgctgagcttggtgtcact
ctccccaatgcagcttataaattaaatgttaggcctttgctaaggctggcatgcagcaga
gtttttggctcagcctcaggctttactgatatgctggttcagcatataccttctgctaag
aatgctgcagctaaaaaggttgatcatgtatacacagggccaaaagattcaacaatttac
aaggccatggtagattgtaatccttctggcccattaatggttaatgtgaccaaactgtat
cccaagtccgattgcagttcctttgatgctttcggtagggtttatagtggtcaaattttg
acaggacagtctgtaaaagtgttgggagaaggctattcaccagatgatgaggaggacatg
actgtaaaagaagtgacaaaattatgggtatatcaagctcggtacaggttaccaataagt
atggcacctcctggctcttgggttctcattgaaggcgtggatgcttcaattatgaaaacg
gcaacactctgtaatgtgaattatacctatgaagatgtttacatattccggcctcttcaa
ttcaatactcttccagttgtgaaaactgctacggagccactcaatccaagtgaattgcca
aaaatggtggagggtctaaggaagatcagtaaaagctatcctctagccatcacaaaagtt
gaagagtctggagagcacacaattcttggtactggagagttatatttggattctataatg
aaggaccttagagagctctactctgaagtagaagtcaaggtggcagatcctgttgtctct
ttttgtgaaacagtggttgagtcttcatcaatgaaatgttttgctgaaacacccaataag
aagaataaaataaccatgattgcagagccattggagaaagggcttgctgaagacattgag
aatggggttgtaagcatcgattggaaccgtaaagcacttggtgatttcttcaagacaaaa
tatgactgggatttgcttgcagcacgatccatatgggcattcggccctgacaagcagggg
cctaacattttattggacgacacactacctagtgaagttgacaaaacattgctgagtgct
gtcaaggattctattgttcaaggttttcagtggggtgcacgagaaggaccgctatgtgac
gaaccaatcagaaatgttaagttcaaaatagttgatgctaggattgcacagttaccactg
gatagaggatctggtcagattattcccacttcccgacgagtcgcctattcagcctttctg
atggcaacccctcgactcatggaaccagtatactacgtggagatacaaacaccaatcgac
tgtctctctgcaatatatacagtgttatctcgtagacgtggacatgttacagcagatgtt
ccgcagcctgggactccagcttacattgtgaaggcatttctacctgtaatagagtcattt
ggttttgagacggacttgaggtaccatacccaagggcaagcattttgcctttcagtcttt
gatcattgggccatagtacctggagatccccttgacaagagcatagctctgcggccactc
gaacccgcaccaattcagcaccttgctcgcgaatttatggtaaagacaaggcgtcgcaag
ggaatgagtgaagacgttagcataaacaagttcttcgatgaggctatggtggtggagctt
gctcatcaagcagctgatattcatcaacagatgatatga
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