Roseobacter denitrificans: RD1_3988
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Entry
RD1_3988 CDS
T00376
Name
(GenBank) coenzyme F420 hydrogenase, beta subunit, putative
KO
K00441
coenzyme F420 hydrogenase subunit beta [EC:
1.12.98.1
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00680
Methane metabolism
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
RD1_3988
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.12 Acting on hydrogen as donor
1.12.98 With other, known, physiological acceptors
1.12.98.1 coenzyme F420 hydrogenase
RD1_3988
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Gene cluster
GFIT
Motif
Pfam:
FrhB_FdhB_C
FrhB_FdhB_N
DUF2442
Motif
Other DBs
NCBI-ProteinID:
ABG33439
RoseoBase:
RD1_3988
UniProt:
Q161A4
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Position
complement(3846932..3848140)
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AA seq
402 aa
AA seq
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MLTPEFRDPAPRGLCTDCGVSRLKDPRACGKACQFIAPDYPALEKAVHGRARGTGDETFF
GPFKAMHRARMVAPAEGAQWTGITTALAADLLTRGRVDAVLTMVPDDADRWRPKPALITE
ASDMARARGMRMGYAPLLALLEEAQAQGFNRLAVIGIPCQIYALRALEADLGLERLYVIG
TPCSDNTTTENFHRFLALLDEAPETITYLEFRADYQVELRFTDGRQRLIPFLSLPISDLP
RDFFPLTCRTCVDYTNSLADITVGYMGGEGGQWLLVRNARGAEMLAGLGDRIQLQTPGSA
GKRANAVKGFIANTARAAGGLPLRRMPDWLRPIVSWLQPRIGPRGLEFARTRIEMKAAET
ILHLRREEPAKMKNMIPDHVWKVAAPYDLTPQDGERASKTDD
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgcctgagtttcgcgaccccgccccgcgtgggctgtgtacggattgcggtgtt
tcgcgcctgaaggacccgcgcgcctgcggtaaggcctgccagtttattgcgccggattat
cccgcactggaaaaggccgtgcatgggcgcgcgcgcggcacaggcgatgaaacctttttc
ggcccgttcaaggcaatgcaccgcgcgcgcatggtggcccctgcggagggtgcgcaatgg
acgggtatcacgaccgcgctggccgcggatttgctgacgcggggtcgtgtcgatgcggtg
ctgacgatggtgccggatgatgccgaccgctggcggcccaaacctgcgttgattaccgag
gccagcgatatggcgcgcgcgcgcggcatgcgtatgggatatgcgccgctgctggctttg
ctcgaagaggcacaggcacaggggttcaaccggctcgctgtgattggcatcccctgccag
atttacgccctgcgcgcgctggaggcggatctggggttggagcgtctctatgtcattggc
acgccctgttctgacaatactacgaccgaaaacttccacaggtttctggcgctgctggat
gaggcccctgaaacgatcacctatcttgagttccgcgcggattatcaggtggagttgcgg
tttacggatggacgtcagcggctcatcccctttttgtcgctgccgatttctgatttgcca
cgtgacttctttccgctgacctgccgcacctgcgttgattacaccaacagtctggcggac
atcacggtgggttatatgggcggtgaggggggtcaatggctgctcgtgcgcaacgcgcgc
ggggccgaaatgctggcaggactgggcgatcgtatccagttgcagacccccggttctgcg
ggcaagcgggccaatgccgtgaaagggttcattgccaacacggcgcgcgcagcgggcggg
ttgcccttgcgccgtatgcccgattggctgcgcccaattgtcagttggctgcaaccgcgc
atcggcccacgcggccttgaatttgcgcgcacgcggatcgagatgaaagcggccgaaaca
atcctgcatctgcgccgcgaagaaccggcaaagatgaagaacatgatccctgatcacgtc
tggaaagtggcagcaccctacgatctgacaccgcaggacggtgaacgcgcctcgaaaacg
gacgactaa
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