Rothia dentocariosa: HMPREF0733_11501
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Entry
HMPREF0733_11501 CDS
T01343
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03030
DNA replication
rdn03410
Base excision repair
rdn03420
Nucleotide excision repair
rdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0733_11501 (ligA)
03410 Base excision repair
HMPREF0733_11501 (ligA)
03420 Nucleotide excision repair
HMPREF0733_11501 (ligA)
03430 Mismatch repair
HMPREF0733_11501 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rdn03032
]
HMPREF0733_11501 (ligA)
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_11501 (ligA)
Enzymes [BR:
rdn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0733_11501 (ligA)
DNA replication proteins [BR:
rdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0733_11501 (ligA)
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0733_11501 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0733_11501 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF0733_11501 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0733_11501 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
ADP40958
UniProt:
E3GZY8
LinkDB
All DBs
Position
1645878..1648100
Genome browser
AA seq
740 aa
AA seq
DB search
MTENLAETPASLDRALKALDSSAELTDTIRAEYAELTDTIRTARHDYYQEDAPTLSDAEY
DRLYRRLEQIEAQYPALIANDSPTQEVGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWL
TKAEENTRLLTGTAPQWLTELKIDGLAVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIA
SIPQKLAGENHPAELEVRGEVFISSADFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSA
VTAERPLSMYVHGVGSRTGLDVNSQYQTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYG
EKRHSLVHEIDGIVIKVNDFVAQTQLGYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRT
GRVTPYGVMEPVLVSGSTVERATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVVAL
RNGHEREFVMPTECPSCGTTLAPGKEGDVDMRCPNYRSCPAQLTERIYYAASRGAFDIEA
LGFEAAKALTAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFY
TKPTKAKPDPVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDA
IAQADRDRLAAVDGVGGVIADSIIEWFATDWHREVLARWADAGVRMEDERDASIERTLEG
VTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALGIPVL
DEDGFTKLLAHGPDALAPGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaaatcttgctgaaactcccgcatcccttgaccgtgccctcaaggcgctagat
tcgagcgctgagctgactgatactattcgcgccgaatatgccgagctgaccgatactatt
cgcaccgcccggcatgactactatcaggaagatgccccgactctctcagatgccgaatac
gataggctctaccgcaggcttgagcagattgaggcacaatatcccgcgttgattgctaac
gattcgcctacccaagaggtaggtggagaagtcagcgaggctttttcgccggtaacccat
ctggtacgcatgtactcccttgaggatgttttttctcttgaggagcttcgggcatggcta
acaaaggccgaggaaaatacccgtcttctcaccggcaccgcaccgcagtggcttacggag
ctgaagattgatggtcttgcggtcaatctgctgtatcgtaacggtgtgttggtgcgtgcg
gctactcgtggtgacggtactacgggtgaggatgtaacccataatgtgcgcactatagcc
tcaatcccacagaaattagcgggggagaaccacccggcggagcttgaagtacgcggcgag
gttttcatttcatcggcagacttcaagaaactcaacgaaaaaatggtgtctgaggggaag
aacccgttcgccaacccccgaaacgccgcggcaggatccctgcgtcagaaagactctgcc
gtgaccgctgaacgccctctgagtatgtatgttcatggcgtgggctcgcggaccgggtta
gatgtgaattcccagtaccaaacctacgagcaattggccgcttgggggcttcccaccagt
ccatacagcaaactttttacttcagtcgatgatattcttcggtatattgccgagtacggt
gaaaagcgccattctctggtgcacgagatcgacggcattgtcatcaaggtcaatgacttt
gtagcgcagactcaactggggtacacctcgcgagtgccgcgctgggctgtagcgtacaaa
tacccgcccgaagaggttaacaccaagcttctcgatattcgcgtggatgttgggcgtacc
ggtcgcgtgaccccctatggtgtgatggaacccgtgcttgtctcgggctctaccgttgaa
cgcgcaaccttacataatcaggatgtggtgaaggctaagggtgtgcttatcggagacacc
gtggttcttcgtaaggctggcgacgtgattcccgagatcgtggggcctgttgttgctctt
cgtaacggtcatgaacgcgagttcgttatgcccaccgagtgtccttcctgcggtacgacg
ttggctcccggtaaagagggcgacgtcgatatgcgctgccccaattaccgttcctgcccg
gcgcagctgaccgagcgcatctactacgccgcgtcgcggggtgctttcgatattgaagca
ctcggctttgaggcggctaaggcgttgacagctcccgccgagcctgagcagcctccgctc
acgagtgaggcgttcctcttcgatctcaccgccgaagatctacgcgatgtgaaaattcgc
cgcgagaagaaggtcaagggggtgggtaccggcaagtttgagcttgttccatacttctat
acgaagcccacgaaagcaaagccagaccctgttcctacgaagaacacacaaaatctcttc
gtagagcttgagaaagcaaaatcgcagcctctctggcgcgtgcttgtggccttatcgatt
cgccatgtggggccaaccgcggcgcgagcccttgccaccgaatttggctctatggatgcg
atcgcccaggctgaccgggacaggttagcggctgttgatggtgtgggcggcgttatcgcc
gattcgattatcgaatggtttgcaacggattggcatcgcgaagttcttgcccgttgggcg
gatgccggtgtgcgtatggaagatgagcgtgacgcgtcaatagaacgcacgctcgaaggc
gtaaccgtggttgtgaccggaacccttgtgaactatagccgtgacagcgcgaaggaagcg
attatcgtgcggggcgggcgtgcctccgggtctgtgtctaagaagacccattttgtggtt
gccggagcctctgcggggtcaaaactcgataaggccgaggccctgggaattccggttctt
gatgaagacgggtttacgaaacttttggcccacgggcccgatgcgctagcaccgggggag
tag
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