Roseateles depolymerans: RD2015_1221
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Entry
RD2015_1221 CDS
T04166
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp00300
Lysine biosynthesis
rdp00550
Peptidoglycan biosynthesis
rdp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RD2015_1221
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD2015_1221
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rdp01011
]
RD2015_1221
Enzymes [BR:
rdp01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
RD2015_1221
Peptidoglycan biosynthesis and degradation proteins [BR:
rdp01011
]
Precursor biosynthesis
Amino acid ligase
RD2015_1221
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
MFS18
Motif
Other DBs
NCBI-ProteinID:
ALV05712
UniProt:
A0A0U3NB01
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All DBs
Position
1400889..1402406
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AA seq
505 aa
AA seq
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MLMHLKSPEAAARWLQEWTPSGQLRTDSRLVGAGDAFIAWPGYAKDARQFVAGALAAGAA
TCLVEDQGVAEYGFVDARIASLPDLKARCGQIASAFYGEPSSQLSVLAVTGTNGKTSSAW
WIAQALTLLGSRCGVVGTLGVGQPPVPGAITHSSIEATGLTTPDPVRLQEAFRRMRDDGF
GACAIEASSIGIEEHRLTGTRIQVALFTNFTQDHLDYHGSMDAYWAAKRRLFSWPGLQAA
VLNIDDAKGAELAAELTAGAASGLDVWTYGLNRSDARLWAENLRHEAQGLAFTLREGEQS
VAVQTGLIGDYNVANLLGVMAGLRALGHGLDDIARVAAQVTPVPGRMQRVGNGRELPQLV
VDYAHTPDALEKALQALAPLAAARGGELRVVFGCGGNRDPGKRPLMGAIAARLARHVVLT
SDNPRDEDPARILADIEAGLPASAQRLVLADRAEAIATAVRNAGARDVVLIAGKGHEDYQ
EIRGERRPFSDVQAARAALIERAGL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgttgatgcacctcaaatctcccgaagcagccgcccgctggctgcaggaatggaccccc
agcggccagctgcgcactgacagccggctggtcggcgcgggcgacgccttcatcgcctgg
cccggctacgccaaggacgcgcgccaattcgtggccggcgcgctggcggccggcgcggcc
acctgcctggtggaagaccagggcgtggccgagtacgggtttgtggatgcgcgcattgcc
tcgctgccggacctcaaggcccgttgcggccagattgcctccgcgttctacggcgagccc
agcagccagctgagcgtcctggccgtgaccggcaccaatggcaagacgtccagcgcctgg
tggatcgcccaggcgctgaccctgctggggtcgcgctgcggtgtggtgggcacgctcggc
gtcggccaaccgcccgttccgggcgcgatcacccacagctcgatcgaggccacgggcctg
accacgcccgacccggtgcggctgcaggaggcgtttcgccgcatgcgggatgacggcttc
ggcgcctgcgccatcgaggcttcgtccatcggcatcgaggaacaccgcctgacgggcacc
cgcatccaggtggcgctgttcaccaatttcacgcaggaccacctggactatcacggcagc
atggacgcctactgggctgccaagcgccgtctgttcagctggcccggcctgcaggccgcg
gtgctgaacatcgacgatgccaagggcgccgaattggctgcggaactcaccgcgggcgct
gcctcgggcctggacgtgtggacctacggcctgaaccgcagcgacgcccgcctgtgggcg
gagaacctgcgccatgaggcccagggcctggcgttcacgctgcgcgaaggcgagcagtcg
gtggccgtgcagaccggcctgatcggcgactacaacgtcgccaacctgttgggcgtgatg
gccggcctgcgcgcattgggccatggcctggacgacatcgcccgcgtggcggcccaggtg
acgccggtgcccggccgcatgcagcgcgtgggcaatggccgtgaactgccgcaactggtg
gtggactatgcccacacccccgacgcgctcgaaaaggcgctgcaggcgctggccccgttg
gcggcggcacgcggcggtgagctgcgcgtggtgtttggctgcggcggcaaccgggatccc
ggcaagcgtcccctgatgggggccattgcagcgcgactggcgcggcatgtcgtgctgacc
agcgacaacccgcgggatgaagatcccgcccgcatcctggccgacatcgaagccggcctg
cctgcttcagcacagcgcctggtgctggcggaccgcgccgaagccatcgccaccgccgtg
cgcaacgcaggcgcccgtgatgtggtgctgatcgccggcaagggccatgaggactaccag
gagatccgcggcgagcgccgtccgttctccgatgtgcaggctgcccgtgcggcgctgatc
gaaagggccggcctgtga
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