Roseateles depolymerans: RD2015_2343 Help Entry RD2015_2343       CDS       T04166                                  Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rdp  Roseateles depolymerans Pathway rdp03030   DNA replication rdp03410   Base excision repair rdp03420   Nucleotide excision repair rdp03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rdp00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RD2015_2343    03410 Base excision repair     RD2015_2343    03420 Nucleotide excision repair     RD2015_2343    03430 Mismatch repair     RD2015_2343  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rdp03032]     RD2015_2343    03400 DNA repair and recombination proteins [BR:rdp03400]     RD2015_2343 Enzymes [BR:rdp01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RD2015_2343 DNA replication proteins [BR:rdp03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RD2015_2343 DNA repair and recombination proteins [BR:rdp03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RD2015_2343    NER (nucleotide excision repair)     GGR (global genome repair) factors      RD2015_2343    MMR (mismatch excision repair)     DNA ligase      RD2015_2343   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RD2015_2343 SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase Nlig-Ia HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc DUF4796_N Motif Other DBs NCBI-ProteinID:  ALV06814 UniProt:  A0A0U3L6C6 LinkDB All DBs Position 2746123..2748189 Genome browser AA seq 688 aa AA seqDB search MNSDRSPDVVPADAAARAAELREQLHHHAHLYYVLDAPALPDAAYDQLFQELQALEARHP SLLTPDSPTQRVGGKVLEGFVPVRHTVPMLSIRTETDTEASGAETFDARVRRELDLEPSA APVEYAAELKFDGLAINLRYEHGVLVQAATRGNGETGEDVTQNVRTIGQIPLRLSGDGAQ AAVLEVRGEVYMRRDDFEALNERQRAANEKTFVNPRNTAAGAIRQLDPGLVRQRPLSFFA YGLGDVQGWDIPPTHSGLLDALKAMGLPVSDDRAVVRGAEGLVKFHQQMGAKRDELPFDI DGVVYKVNSRELQRRLGFVSREPRWAVAHKYPAQEQITRLNAIDIQVGRTGKLTPVAKLE PVFVGGTTVSNATLHNVFELRRKRVRVGDQVIVRRAGDVIPEIVGKVDAPRAQYVANFHM PRHCPICGSDVLREKGGIDHRCSGGIFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD GGIVTSLPGLYKLGVAKLSALERMGEKSAQNLFEALQKSKTTTLPRFLYALGIRHVGETT AKDLAKHFGNMDALMAATEEQLLAVKDVGPVVAKSIAAFFAEPHNREVVEQLIAAGVDYP KTDGAAAEPQGPQPLAGKTLVLTGSLPTLSRDEAKALIEAAGGKVSGSVSKKTSYVVAGE EAGSKLDKAQELGVTVLDEAGLHALLQG NT seq 2067 nt NT seq  +upstreamnt  +downstreamnt atgaattccgatcgttctcctgatgtcgtgccggcagacgccgcagcccgtgcggctgag ctgcgcgagcagctgcatcaccatgcccacctgtattacgtgctggacgcgccggcgctt ccggatgccgcctacgaccagttgttccaggaattgcaggccctggaggcccgccatccg tcgctgctgacgccggattccccgacgcagcgggtgggcggcaaggtgctggaggggttc gtgccggtccgtcataccgtgccgatgctgtccatccgcaccgagaccgataccgaagcc agcggcgccgagaccttcgatgcacgcgtgcgccgggaactggacctggagcccagcgcc gcgccggtggaatacgcggccgagctcaagttcgatggtctggccatcaacctgcgttat gagcacggtgtgctggtgcaggcggccacccgcggcaacggcgagactggtgaggacgtg acccagaacgtgcgcaccatcggccagatccccctgcggctgtccggcgacggggcgcag gcggcggtgctggaggtgcgtggcgaggtctacatgcgccgcgatgatttcgaggcgctg aatgagcgtcagcgcgcggccaacgaaaagaccttcgtgaatccgcgcaacacggccgca ggtgccattcgacaactggatccgggcctggtgcggcagcgtccgctgagtttcttcgcc tacggcctgggggacgtgcagggctgggacatcccgcccacccattccggcctgctcgat gccttgaaggcgatggggctgccggtctccgacgaccgcgccgtggtgcgaggcgccgag ggtctggtgaagttccaccagcagatgggggccaagcgggacgagttgccgtttgacatc gacggtgtggtctacaaggtcaacagccgtgaactgcagcgtcgtctgggctttgtctca cgcgaaccgcgctgggcggtggctcacaagtacccggcgcaggaacagatcacccggctc aatgccatcgacatccaggtgggccgcaccggcaaactcacgccagtggccaagcttgaa ccggtgtttgtaggcggcacgaccgtcagcaatgcgacgctgcacaacgtcttcgagctg cgccgcaagcgggtgcgggtgggggatcaggtcatcgtccggcgcgcgggggatgtgatc ccggaaatcgtcggcaaggtggatgctcctcgggcgcagtatgtggccaacttccacatg ccgcgccactgcccgatttgcgggagtgatgtgttgcgggagaagggcggcatcgaccat cgctgcagcggcggcatcttctgcccggcgcagcgcaagcaggccttgctgcattttgcc ggccggcgtgccatggacatcgagggcctgggcgacaagctggtggaccagttggtggat ggcggcatcgtcaccagcctgcccggcctgtacaagctgggcgtggccaagctgtcggcg ctggaacgcatgggggagaagagcgcgcagaacctgtttgaggccttgcaaaagagcaag accacgacgctgccgcgcttcctgtatgcgctgggcatccgccatgtgggcgagaccacg gccaaggacctggcgaagcacttcggcaacatggacgcgttgatggccgccaccgaggag caactgctggccgtcaaggatgtgggcccggtggtggccaagagcatcgcggccttcttc gccgagccgcacaaccgggaggtggtggagcagttgatcgctgcgggtgtggactatccc aagaccgatggcgccgctgccgagccgcaagggccgcagccgctggccggcaagacgctg gtgttgaccgggtcgctgccgaccctgtcacgggacgaggccaaggccttgatcgaggcg gcgggcggcaaggtcagcgggtccgtctccaagaagacgagctacgtggtggccggcgaa gaggcgggatccaagctggacaaggcccaggaactgggcgtgaccgtgctggatgaggcg ggcttgcacgcgctgctgcaaggctga

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