Roseicyclus elongatus: roselon_02642
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Entry
roselon_02642 CDS
T03060
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
red
Roseicyclus elongatus
Pathway
red03030
DNA replication
red03410
Base excision repair
red03420
Nucleotide excision repair
red03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
red00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
roselon_02642
03410 Base excision repair
roselon_02642
03420 Nucleotide excision repair
roselon_02642
03430 Mismatch repair
roselon_02642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
red03032
]
roselon_02642
03400 DNA repair and recombination proteins [BR:
red03400
]
roselon_02642
Enzymes [BR:
red01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
roselon_02642
DNA replication proteins [BR:
red03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
roselon_02642
DNA repair and recombination proteins [BR:
red03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
roselon_02642
NER (nucleotide excision repair)
GGR (global genome repair) factors
roselon_02642
MMR (mismatch excision repair)
DNA ligase
roselon_02642
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
roselon_02642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AHM04952
UniProt:
W8S454
LinkDB
All DBs
Position
2539651..2541915
Genome browser
AA seq
754 aa
AA seq
DB search
MAGTGTSANQAPQQLTEAEARDRLAALADLLHAADTAYHAEDAPTLSDAEYDALKRENAA
IEARFPHLKRADSPSEQVGAAPAEGFGKVTHAERMLSLANAFDDADVADFVAGIRRYLGL
AADAPLAFTAEPKIDGLSLSLRYEHGRLVAAATRGDGSVGENVTANALTIDDIPARIDDA
PEVLEVRGEVYMSHADFEALNRRQTEIGGKSFANPRNAAAGSLRQLDAEITRARPLRFFA
YSWGALSESLAETQMGALDRLRAFGFVINDRTRACDSVAEMLAHYRAIEQDRATLGYDID
GVVYKLNDLDLQRRLGMRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTP
VTVGGVVVSNATLHNEDYIAGRDSRGERIREGKDIRIGDWVQVYRAGDVIPKVADVDLSK
RPEDAQPYVFPSVCPECGSDAVREEGDSVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGL
GAKQVEAFYGDGWVKEPADIFELKEKYGTGLQQLKNREGWGEKSAKNIFDAIDDKRKIPL
KRVIFALGIRHVGEVAADDLARHFASWPAFEAAVIQAIPAAAAHRAGEAAVAQEQAAARE
AGRRAQISETRRAAWEAADVPKAAQSAWDDLVGIDGIGATVALSLSDTFAQEAERASIDR
LIAHLDIQPPEARATEGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSGSVSAKTDL
VVAGPGAGSKAKKAEDLGIEMIDEDGWLALIGDG
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaccggaacatccgcaaaccaggcgccgcaacagttgacggaagccgaggcg
cgcgaccggctggccgcactggccgatctgctgcacgccgccgacacggcctatcacgcg
gaggatgccccgaccctttcggatgccgaatatgacgcgctgaagcgtgaaaacgccgcg
atcgaggcgcgctttccgcatctcaaacgtgccgacagccccagcgagcaggtcggtgcc
gcccccgccgaggggtttggcaaggtcacccatgccgaacgcatgctgtcgctggccaat
gccttcgacgacgcggatgtcgccgatttcgtcgccggcattcgccgctatctcgggctg
gccgcggatgcgcccctggcctttaccgccgaacccaagatcgacggcctgtcgctctcc
ttgcggtacgaacatggccggctcgtcgccgcggccacgcgcggcgatggcagcgtcggc
gaaaatgtcaccgccaatgcgctgaccatcgacgatattccggcgcggatcgatgacgcc
ccggaggtgttggaggtgcgcggcgaggtctacatgagccacgccgatttcgaggcgttg
aaccggcgccagaccgagatcggtggcaagagtttcgcgaacccgcgcaacgccgcggcc
gggtcgctgcggcaactcgatgccgagatcacgcgcgcccgccccttgcggttcttcgcc
tattcctggggcgcgctgtccgagagcctggccgaaacacagatgggcgccctcgaccgg
ctgcgggcgttcgggttcgtcatcaatgaccggacccgagcgtgtgacagcgtggccgag
atgctggcccattaccgcgccatcgagcaggaccgcgcgaccctaggctatgatatcgac
ggggtggtctacaaactgaacgaccttgatctgcagcgccgtctcgggatgcgctcgacc
acgccgcgatgggccatcgcgcacaagttcccggctgagctggcttggacccggctcgag
gcgatcgacatccaggttggccgtaccggggcgctgtcgcccgtcgcgcggctgacgccg
gtgaccgtgggcggcgtggtggtgtcgaacgccaccctgcataacgaggattacatcgcg
ggccgcgacagtcgcggcgagaggatccgcgagggcaaggatatccgcatcggggattgg
gtgcaggtctatcgcgcaggcgatgtcattcccaaggttgcggatgtcgacctgtcaaag
cggcccgaggatgcgcagccatacgtgttcccgagtgtctgccccgaatgcgggtcggac
gccgtgcgcgaggagggcgacagcgtgcgccgctgcacgggcggcttgatctgtcctgcg
caagccgttgaaaagttgaagcatttcgtcagtcgcgcggcctttgacatcgatggcttg
ggggccaagcaggtcgaggcgttctatggcgacggatgggtcaaggaacccgcggatatc
tttgaattgaaagaaaaatatggcactggcttgcagcagttgaaaaatcgcgaaggctgg
ggcgagaaaagcgcgaagaatatttttgatgccattgatgataaacggaaaattcccctc
aagcgtgtgatattcgcgcttggcatccgccacgtgggcgaggtggccgccgatgatctg
gcacgacatttcgcaagttggccggcgtttgaagcggccgtgattcaggccatcccggcc
gccgccgcccatcgcgccggcgaggcggccgtcgcccaagagcaggcggccgcacgagag
gcaggccgccgcgcgcagatcagcgagacccgccgcgccgcatgggaggcggccgacgtg
cccaaggcggcccaatcggcctgggacgatcttgtcggcattgacgggatcggcgcgacc
gtcgccctgtcgctcagcgataccttcgcgcaggaggccgagcgcgcctcgatcgaccgg
ctgatcgcacatctcgacatccagccgcccgaggcgcgcgccaccgagggcagccccgtg
gccggcaagaccgtggtcttcaccggcagccttgaaaagatgacccgtgccgaggccaag
gcgcgggccgaggcgctcggtgccaaggtgtcgggcagcgtgtcggccaagaccgatctg
gtcgtcgcggggccgggggcgggatcgaaggcgaaaaaagccgaggatctgggcatcgag
atgatcgacgaggacggctggctggccttgatcggtgatggctga
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