Klebsiella electrica: electrica_00098
Help
Entry
electrica_00098 CDS
T06174
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ree
Klebsiella electrica
Pathway
ree03030
DNA replication
ree03410
Base excision repair
ree03420
Nucleotide excision repair
ree03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ree00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
electrica_00098 (ligB)
03410 Base excision repair
electrica_00098 (ligB)
03420 Nucleotide excision repair
electrica_00098 (ligB)
03430 Mismatch repair
electrica_00098 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ree03032
]
electrica_00098 (ligB)
03400 DNA repair and recombination proteins [BR:
ree03400
]
electrica_00098 (ligB)
Enzymes [BR:
ree01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
electrica_00098 (ligB)
DNA replication proteins [BR:
ree03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
electrica_00098 (ligB)
DNA repair and recombination proteins [BR:
ree03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
electrica_00098 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
electrica_00098 (ligB)
MMR (mismatch excision repair)
DNA ligase
electrica_00098 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
electrica_00098 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QDI06350
LinkDB
All DBs
Position
98194..99873
Genome browser
AA seq
559 aa
AA seq
DB search
MHKWVWVIGTWAVAGYGQAACPEWPQAQAIQEVYRLNQQVTAWNNAYWRQGSSGVSDEVY
DQLSARLMQWRRCFSLVSPADSDDVPPASGEVRHPVAHTGVRKLADKSDVARWMHGKKDL
WVQPKVDGVAVTLVYRRGRLVQAISRGDGRAGEAWTAKVQQIPAVPKVTEGELANSVLQG
ELFLQRDGHVQKQMGGMNARAKVAGALLRLDTPAQLAELGIFIWAWPDGPQDMGQRLALL
RKSGFIHSAYFTQPVTDVQQVAQWRERWLTSPLPFATDGVVVRRSQEPAGRLWSPGQGEW
VVAWKYPPASRLMEVRGIHFRVGRSGKISVVALLDPQRLDDKRVKQVSIGSVSRWRRLDI
GLGDQLQISLAGQGIPRLDSVVWRSAQRTKPQPPPERFTPLTCYFVTPGCDAQFLSRLIW
LSSKPILNLDGVGESVWRTLQDARPLDHLFSWLALTPAQLQEIPGITSGRGQRLWHQFNL
ARERPFLRWIQAIGVPIPRVALAGLAGENWQQLQERTEEQWQRLPGMGAGRARRLVAFLR
HPDVAALAQWLSGQHIPGF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcataaatgggtctgggtgattggcacgtgggcggtggctggatacgggcaggctgcc
tgtcctgaatggccgcaggcgcaggccattcaggaggtatatcgtctgaaccaacaggtg
actgcctggaacaatgcgtactggcgacagggaagtagcggggtcagtgatgaggtatac
gaccagctttcggcgcgactcatgcagtggcggcgctgtttttcgctggtatcgcccgca
gatagcgatgatgtgccgcctgcaagcggagaggtcaggcatccggtcgcccataccggc
gtgcgtaaactggccgataaatcggatgttgcgcggtggatgcacggtaaaaaggatctc
tgggtgcagccgaaggtggacggtgtcgccgtgacgctggtgtatcgtcgcgggcggctg
gtacaggccattagtcggggagatgggcgagccggggaggcgtggaccgcaaaggtacag
cagattcccgcagtgcctaaggtaacggagggggaactggcgaacagcgtgctgcagggg
gagcttttcctgcagcgcgacgggcatgtgcagaagcagatgggaggaatgaatgcccgg
gcgaaagtggctggtgctctgctgcgcctcgataccccggcgcagctcgcggagttgggg
atttttatctgggcatggccagatggccctcaggacatgggccagcgactggccctgttg
cgcaagagtggatttatccacagcgcatattttacccagcctgttacggatgtgcagcag
gtggcacagtggcgagagcgctggctaacctcgcctctgccttttgctaccgatggcgtg
gtcgtccgccgtagtcaggagcctgccgggcgattgtggtcgcctgggcagggtgaatgg
gtcgttgcatggaaatatccgccggcgtcgcggttaatggaggtgcgcggcatccacttt
cgggtcgggcgcagcggcaaaatttccgtcgttgctctgctggatccgcagcgcctcgac
gacaagcgggttaagcaagtcagtatcgggtcggtttcccgctggaggcgcctggatatt
ggcctcggcgatcagctacaaatcagtctggccggtcagggcattccgcgcctcgacagc
gtagtgtggcggtcggcgcagcgtacgaaaccgcagcctcccccggaacggtttaccccg
ctgacctgctatttcgtcacgccggggtgtgatgcgcagtttctctcacggcttatctgg
ctgtcgtcaaaaccgattctgaatcttgatggcgtgggcgagtcagtgtggcgcacgcta
caagatgcgcggccgctggatcacctgttctcgtggctggcattaacgccagcgcagttg
caggagattccggggataacctccgggcgagggcagcggctgtggcaccagtttaatctg
gcgcgcgagcggccttttttgcgctggatccaggcgattggcgtaccgataccccgggtg
gcgcttgctggcctggcgggggaaaactggcagcagctacaagaacgtaccgaggaacag
tggcagcgtctgccgggcatgggggccgggagagcgagacggctggttgcctttctccgg
cacccggatgttgccgcgctggcgcagtggctcagcgggcaacatatacccgggttttga
DBGET
integrated database retrieval system
