Rhizobium etli bv. mimosae IE4771: IE4771_CH03096
Help
Entry
IE4771_CH03096 CDS
T03310
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03030
DNA replication
rei03410
Base excision repair
rei03420
Nucleotide excision repair
rei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IE4771_CH03096 (ligA)
03410 Base excision repair
IE4771_CH03096 (ligA)
03420 Nucleotide excision repair
IE4771_CH03096 (ligA)
03430 Mismatch repair
IE4771_CH03096 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rei03032
]
IE4771_CH03096 (ligA)
03400 DNA repair and recombination proteins [BR:
rei03400
]
IE4771_CH03096 (ligA)
Enzymes [BR:
rei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IE4771_CH03096 (ligA)
DNA replication proteins [BR:
rei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IE4771_CH03096 (ligA)
DNA repair and recombination proteins [BR:
rei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IE4771_CH03096 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE4771_CH03096 (ligA)
MMR (mismatch excision repair)
DNA ligase
IE4771_CH03096 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IE4771_CH03096 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
5_3_exonuc
RNA_ligase
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AIC28189
UniProt:
A0A060I3A0
LinkDB
All DBs
Position
complement(3058952..3061108)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDALTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEAR
FPELIREDSPSRHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMAEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRA
AEARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAASLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgatgcgttgacgatcgaagaggctgccgccgagctt
gagcggctggcaaaggaaatcgcgcatcatgatgcgctctatcacggcaaggaccggccg
gagatatcggatgccgattacgacgcgctgaagcgccgcaacgatgcgctggaggcgcga
tttcccgaactgatccgcgaggacagcccgtcgcggcatgtcggtgccgctccttccgtc
accttctcgccggtcactcacgcgcggccgatgctgtcgctcgacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccggctgccggaccag
tcgatcgcctttaccgccgagccgaagatcgatggtctgtcgatgtcgattcgctacgag
aacggcaggctggtgaccgccgccacgcgcggcgacggcacgacgggggagaacgtgacc
gccaacatccggacgatcgccgagatccccaatgagttgccgaagggcgttcccgccgtg
gtggaaatccgcggcgaggtctacatggccaagagcgacttcctggcgctgaaccggcag
atggaggcggagggtaagcagacctacgtcaatccgcgcaatacggccgccggatcgctg
cgccagctcgacgccaaggtgacggcgagccgcaagctgaaattttttgcctatgcctgg
ggcgagatggcggagatgccggcggacacccagttcggcatggtgcagaccttcaaggac
tggggctttcccgtaaacccgctgatgaagcggctgaattcggtcgccgacattctgacc
cattatgacgagatcggccttgagcggccggaccttgattacgacatcgatggcgtcgtc
tataaggtcgacagcctcgaactgcagcagcgcctcggcttccgctcgcgttcgccgcgc
tgggcgacggcgcacaagtttccggccgagcaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggcgcgctgacgccggtggcgcggctgaagccgatcacggtc
ggcggcgtcgtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggcatcggc
aacagcggtgagcgtatccggccggaggagcacgatattcgcgagggcgatacggtcatc
gtccagcgtgccggcgacgtcattccgcagatcctcgacgtggtgatggaaaaacgcgcg
gccgaggcccgctcatacgagtttccgaagacctgcccggtctgcggctcgcatgccgtg
cgcgaggtcaacgagaagaccggcaagatggattcggtgcgccgctgcaccggcggcttc
atctgccgggcgcaggcgacggaacatctgaagcacttcgtctcgcgtaacgccttcgat
atcgaggggctcgggtcgaagcagatcgacttcttcttcgaacacgaggacgcgtcgctg
cagatccgcacggcgcccgagattttcacgctggagaagcgccagcagcaatcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagcgtcggcaagctctatgccgcgatc
aatgaacggcgcagcatcgcgcttcaccgcttcatctatgcgctcggcatccgtcatgtc
ggcgagaccacggccaagctgctggcgcgctcctacggcacctatgaagcatttgccacg
gcgatgaaggaagcagcctcactttcaggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgtggcgcgcgccatggtcgagttctacaaggagccgctcaatatc
gaggtgattacccgcctgcttgatgaggtgacgccacaggaggccgaacagccggtgacg
gcgggaagcccggtcgccggcaaaacggtggtctttaccggttcgctggaaaaattcacg
cgcgacgaggcgaaggcgagggcggaaagcctcggcgccaaggtggcgggatcggtgtcg
aagaaaaccgacatcgtcgtcgccggccccggcgccggctccaagctcgacaaggcgcgc
gaactcggggtgcagacgatggacgaggacgaatggctggcgctgatcagcgggtga
DBGET
integrated database retrieval system
