Rickettsia endosymbiont of Culicoides impunctatus: LF885_00475
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Entry
LF885_00475 CDS
T10695
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rem Rickettsia endosymbiont of Culicoides impunctatus
Pathway
rem03030
DNA replication
rem03410
Base excision repair
rem03420
Nucleotide excision repair
rem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF885_00475 (ligA)
03410 Base excision repair
LF885_00475 (ligA)
03420 Nucleotide excision repair
LF885_00475 (ligA)
03430 Mismatch repair
LF885_00475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rem03032
]
LF885_00475 (ligA)
03400 DNA repair and recombination proteins [BR:
rem03400
]
LF885_00475 (ligA)
Enzymes [BR:
rem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LF885_00475 (ligA)
DNA replication proteins [BR:
rem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LF885_00475 (ligA)
DNA repair and recombination proteins [BR:
rem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LF885_00475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF885_00475 (ligA)
MMR (mismatch excision repair)
DNA ligase
LF885_00475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF885_00475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
UCM85788
LinkDB
All DBs
Position
complement(95154..97250)
Genome browser
AA seq
698 aa
AA seq
DB search
MQNIPTDIEHLSELEVKNLLKHLVNKIREYNNAYYQEDAPLISDAEYDQLFNLNLELEKK
FPHLVLANSPTRQIGSSVAEKFSKVTHINPMFSLSNAFDNEDISEFINRIKNFLRLDSFP
PIFCEPKIDGLSFSATYEDGILTKAATRGDGFIGEDITENIKTIKNFPHTIVAAPAILEV
RGEVYINKQDFLLLNQAQELSKKDKFANPRNAAAGSLRQLDPNVTASRPLGYFVYAVGSS
SSKIADGQDALLDKLKELGFIVNNIGKLAYSEDEMKSFYEYLNSSREELPYEIDGVVYKL
NDFALQQRMGFIARSPRFAIAHKFPAIIGQTKLINITLQVGRTGVLTPVAELEPLSIGGV
RVSRATLHNYQEIIRKDIRINDYVFLQRAGDVIPQITAVDVTRRSSESQKIDMPKLCPSC
GSQLHYNQETIIIRCDNGLNCPAQNYERICHFTSKNALDIDGLGKKQIEFLLEKSLIENP
VDIFYLQNNNEKNLVKLENMVGWGRKSVENLFANIDKAKTVSLNRFIYSLGIRHIGEQTA
KLLAREFQNYNNFIAAMESLLKGDQPIYQRLNDLEGIGDKILLDIIDFFDIKENLQIIQQ
LSKILNIQDHNQQATKTALSGKIVVFTGSLLTLSRAEAKSQAEKLGAKVASSVSSTTDLV
VAGSDAGSKLKKAKELGIKIIDEDEWQELVLLSHTQIF
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattccaactgatattgaacatctttctgaattagaggtaaaaaatttacta
aaacacctggtaaataagataagagaatataataacgcctattaccaagaagatgctcct
ctaatttctgatgctgagtatgatcaattatttaatttaaatcttgaacttgaaaaaaaa
tttcctcatctggtactggcaaatagtccgactagacaaattggtagttctgtagcagag
aaattttcgaaagtaacacatatcaatccgatgttttcgcttagtaatgcctttgataac
gaagatatctcagagtttatcaatagaataaagaattttctacgacttgatagttttccg
cctattttttgcgaacctaaaatagatggcttatctttttctgctacctatgaggatgga
atactcaccaaagctgcgacaagaggtgatggttttattggagaagatataacggaaaat
attaagactatcaagaattttcctcatacaatagttgcggctccagcaattttggaagta
agaggcgaggtctatattaataaacaggattttctattattaaatcaagctcaagaatta
tccaaaaaagataaatttgctaacccgcgtaacgcggctgctgggtcattaagacagtta
gacccaaacgttacagctagtagacctctaggatattttgtttatgctgtggggagtagc
agtagcaaaatagctgatggtcaggatgctttactagataagttaaaagagttagggttt
atcgtcaataatataggaaaattagcctattctgaagatgagatgaaatctttctatgaa
tatttgaattcatctagagaagaattaccttatgaaattgatggtgttgtatataagcta
aatgattttgctttgcaacaaagaatgggctttattgcaagaagtccaagatttgctatt
gctcataaatttccggcgattattggtcaaactaaactaattaacattactctacaagta
ggtagaaccggtgtattaactccagttgctgagttagagccgctttctattggtggagtt
agggtatcacgagctaccttacataattatcaagaaattatcagaaaagacatacggatc
aatgattatgtatttttgcagagggccggtgatgtcataccgcaaattactgctgtagat
gttactcgtcgttctagtgaatcacaaaaaatcgatatgccgaagctttgcccatcttgt
ggctctcagttacattataatcaagaaactataattattcgttgcgataatggtttaaat
tgtccggctcagaattatgaacgtatttgccattttacatctaaaaacgctttagatata
gatggtttggggaaaaagcaaatagaatttttgctggaaaaatctttaatagaaaatcct
gtggatattttttatttacaaaataataatgaaaaaaacttagtcaagcttgaaaatatg
gtaggatgggggcgaaaatctgtagaaaacctatttgccaatattgacaaagccaaaacc
gtttccctaaatagattcatttattccctaggaatcagacatattggtgaacaaaccgcc
aaattacttgctcgagaatttcagaattataataatttcatagcagctatggaatctttg
ttgaaaggtgatcagccaatttaccaaaggttaaatgatttggaaggaataggagataag
attctactagacattatcgacttttttgatattaaagaaaatttacaaattattcagcaa
ctgagtaaaattctaaatattcaagatcataatcaacaagcaactaaaactgcattatct
ggcaaaattgtggtatttactggttccttactaactctctcaagagcagaagccaaatct
caggcagaaaaattaggagctaaagtagccagtagcgtttcgtctaccactgatttagta
gtggcaggtagcgatgctggtagtaaactcaagaaagctaaagagctgggaattaaaatt
attgatgaagatgagtggcaggagttagtactcttaagtcacactcaaatattttga
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integrated database retrieval system
