Prescottella equi: REQ_31660
Help
Entry
REQ_31660 CDS
T01352
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
req
Prescottella equi
Pathway
req03030
DNA replication
req03410
Base excision repair
req03420
Nucleotide excision repair
req03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
req00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
REQ_31660 (ligA)
03410 Base excision repair
REQ_31660 (ligA)
03420 Nucleotide excision repair
REQ_31660 (ligA)
03430 Mismatch repair
REQ_31660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
req03032
]
REQ_31660 (ligA)
03400 DNA repair and recombination proteins [BR:
req03400
]
REQ_31660 (ligA)
Enzymes [BR:
req01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
REQ_31660 (ligA)
DNA replication proteins [BR:
req03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
REQ_31660 (ligA)
DNA repair and recombination proteins [BR:
req03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
REQ_31660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
REQ_31660 (ligA)
MMR (mismatch excision repair)
DNA ligase
REQ_31660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
REQ_31660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
CBH49167
UniProt:
A0A3S5Y9B7
LinkDB
All DBs
Position
complement(3366576..3368714)
Genome browser
AA seq
712 aa
AA seq
DB search
MDQNEAPASVTSQPDVEVVPASAEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLF
GELNALEERHPDLRTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIE
AEVSDGRSAGSAAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNAR
TISDIPETLTPSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSL
RQKNPAVTARRRLGMICHGLGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVE
KVKYWDEHRHDVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIR
VSVGRTGRVTPFAYMEPVLVAGSTVALATLHNASEVKRKGVLIGDTVVIRKAGEVIPEVL
GPVVDVRDGSEREFVMPTECPECGTTLAPAKEGDADIRCPNQRSCPAQLRERVFHVAGRG
AFDIEVLGYEAATALLQAGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSANGRRLLDNLG
SAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVV
AWFEVDWHRDIVAKWRAAGVTMEDERDESIARNLEGLSIVVTGSLEGFSRDEAKEAILVR
GGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRRLLEHGPEGV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtggaccagaacgaagcccccgcctccgtgaccagtcagcccgacgtggaggtcgtgccc
gcgagcgccgaggatcgggagcgctggcaggagctggccgaggtcgtacgcaaccaccag
ttccgctactacgtgctcgattcgccgatcgtctccgacggcgagttcgaccagttgttc
ggcgaactgaacgccctcgaggaacggcatccggatctgcgcacgcccgattcgcccacc
cagttggtcggcggcggcttcgcgaccgaattcaaggccgtggaccatctcgagcgaatg
ctcagcctcgacaacgtcttcgactacgacgagctccgtacctggatcggccgcatcgag
gcagaggtgtccgacggtcgctctgcgggctctgctgccgcccaccccgacctgcactat
ctgtgcgaggtcaagatcgacggcgtcgctctgaacctggtctacgagaacggtcgactc
gtccgggccgcgactcggggtgacggtcgcaccggtgaggacgtcacgctcaatgcccgc
accatctcggacattcccgaaaccctgacgcccagtgacgaatacccgattcccgcgctg
ctcgaggtgcgcggcgaggtcttcttccggctcgaggacttcgccgctctcaacgcctcg
ttggtcgcggacggcaaggcgcccttcgcgaatccgcggaactccgcggccggctcgctg
cggcagaagaatcccgcggtcaccgcgcgacggcggctgggcatgatctgtcacggactg
ggccgcaccgaggggttcgatccggccgggcagtacgacgcgtacaccgcgctcgcggcg
tggggcctgccggtctccacccacacgtcccgggtcgtcggggcggacgcggtggtcgag
aaggtgaagtactgggacgaacaccggcacgacgtcgaacacgaaatcgacggcctcgta
gtgaaagtcgacgagatgtcgctccaccgtcgcctcggcgcgacgtcgagggcgccgcgc
tgggcggtcgcgtacaagtacccaccggaggaggccaccaccaagctcgtcgacatccgg
gtcagcgtcggccgcaccggacgcgtcacgccgttcgcctacatggagccggtgctggtc
gccgggtcgacggtggccctcgcgacgttgcacaacgcgtccgaggtcaagcgcaagggt
gtgctgatcggggacaccgtggtgatccgcaaggccggcgaggtgatccccgaggttctc
ggcccggtcgtcgacgtgcgggacggctccgagcgcgagttcgtgatgcccaccgagtgc
ccggagtgcggcaccaccttggcccccgccaaggagggcgacgccgacatccgctgcccc
aaccagcgctcgtgcccggcgcagttgcgggagagggtgttccacgtcgcggggcgcggc
gccttcgacatcgaggtgctcggctacgaggccgcgaccgcactgttgcaggcgggtgtc
atcagtgacgagggcgacctgttctcgctcaccgaggacgacctgctcgaggcgccgctg
ttccgcaccaaggcggggaagttgtccgccaacggccgccgcctgctcgacaatctgggc
tcggccaagcagcagccgctgtggcgcgtgctggtcgcgctgtcgatccggcacgtcggg
ccgaccgcggcgcgggccctggcgagcgaattcggcagcctcgagcggatcgagaacgcc
ggtgtcgaggaactcgccgcggtcgacggcgtcggcggcacgatcgcggcggctgtcgtg
gcctggttcgaggtcgactggcaccgcgacatcgtcgcgaagtggcgtgccgcgggagtg
acgatggaggacgaacgagacgagtccatcgcgcgcaatctcgagggactgtcgatcgtc
gtcacgggttcgctcgagggcttcagccgtgacgaggcgaaggaagccatcctcgttcgc
ggcgggaaggcggcgggatcggtgtcgaagaagacggcgttcgtggtgatcggggaggcg
cccggatcgaaggcggcgaaggcggaggagttgggtgtcccgatcctcgacgaggacggt
ttccggcgcctcctcgagcacgggcccgagggagtctga
DBGET
integrated database retrieval system
