Rhopilema esculentum: 135681630
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Entry
135681630 CDS
T09994
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
res
Rhopilema esculentum
Pathway
res03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135681630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
res03400
]
135681630
Enzymes [BR:
res01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135681630
DNA repair and recombination proteins [BR:
res03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135681630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
RTT107_BRCT_5
LIG3_BRCT
BRCT_3
Motif
Other DBs
NCBI-GeneID:
135681630
NCBI-ProteinID:
XP_065052274
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEEDRGGQVACQVPFFDLCMVIQKIDDSQGKEKKKDIFKKFLHRWREVHIRIHRDINNN
KNDTFFPAMRLFLPSLDKERPSYGMKEVVLAKYYIDVLNIAKESDDAKKLLNYRAPSSAR
HIAGDFASVAYLVLKDRCPQHGSLTVSDVNACLDAMALANVEKKRDVLKAQICKLIRNTS
AIEQKWLIRMILKELKIGLSENSIFSVFHPDAAELFNVCSSLSKVCSDLRDPNSTLSEVE
IELFSPFRPMLGQRSSFQEVEKIMNYKPFLIETKVDGERIQLHKKGDEYRYFSRGCHDYT
ESFGKTVFRGTLTPHLSFAFPSNIKTLILDGEMTAYDPNSGLFIPKGGNIDVKAEVLDGV
HPCFVVFDILLLNDEKLTNLPLQQRVEKLKGIIKPVPGRLQIIERKTASKKEEVINALND
AIDKREEGIVIKDPESIYKPSKRKGSGWLKIKPDYIDSLSDQLDVLIVGGYYGVGRRGGM
VSHFLCAIAVPPQQPNEYPSVFHSFCKVGSGYSLKELKELCDALEPHWKTFDPKMPPSSI
IFAPGLKEKPDVWIEPSKSKIVQLKAAEITESEKYKCKCTLRFPRVDTIRDDKHWYDCMD
LDELSRLREISGGYLTNKQVTDDGTEEPVKKKKRTVTKLEQPRRIAGHFKGADVSSIKEV
SNLFEDHEFCVMNGSSEHSKHDLEKRIAEHGGKFVQNAGKDTNCVIAEKVNVRVKNIISL
GRHDVVSVSWLVACLNKGKVLAYKPNEMIFTSEKTKKIFSLEYDEFGDSYTKEIDAKNLQ
EIFRNMESKDRVRSTAEEVAEIEFRYFPNDSPYGIFRGCRSFFDKWADPDCPNEVRIFFV
CSFVSPLFCLSAQFFACQPTFLLVRTLFCLSAQFFACQPTFLLVSPLFCLSAHFFACQPN
FLLVSPIFCLSAHFFACPHTFLIVCLLACSSARPTACILVSNTACTIIKTAIVFKSLLTG
YFSALDLRFHGGDVMNQFSPGTTHVIVRKSDLSRLPVFRQRIRNMTKKPHIVTEDWIQSC
IEKFQKIDEKHFEPL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaagataggggagggcaagttgcttgtcaggttccttttttcgatctttgc
atggttatacagaaaatagatgatagtcaaggaaaagaaaaaaagaaagatattttcaag
aaatttcttcatcggtggagggaagtacacattagaattcaccgcgatataaacaataac
aagaatgacaccttctttcccgctatgcgcctttttcttccatctcttgataaggagcga
ccttcatatggcatgaaagaggttgttttggcaaagtattatatagatgttttgaacatc
gcaaaagagagtgatgatgcaaagaaattgttgaattatagagcaccatcgtctgcaaga
catattgctggtgactttgcatccgttgcatatcttgtcttgaaagacaggtgcccacaa
catggcagcctcacagtttctgatgtcaatgcctgccttgatgcaatggctttagctaat
gtggagaaaaagcgtgacgtactaaaagctcagatttgcaagctgataagaaacaccagt
gctatagaacagaaatggctgatcagaatgattcttaaagaattgaaaatcggtctgagc
gaaaattcgattttctctgtcttccatcctgatgcagcagaactgtttaatgtctgcagc
agcttatcaaaggtctgttcagatttacgagacccgaattctacattgagtgaagtggaa
atcgagctgttttctccatttaggccaatgcttggtcaaagatcttcattccaagaggtg
gaaaaaattatgaactacaagcctttcttaattgaaacaaaagttgacggagaaaggatt
caactgcacaagaaaggagatgagtatcgatacttctcaagaggatgccacgactacact
gaatcttttgggaagacagtcttccggggaactttgacgcctcatctctcttttgctttt
ccttcgaacataaagacgttgatattggatggagaaatgacagcttatgatccaaattct
ggtttgtttattccaaaaggcgggaacatagatgtcaaagctgaagtattagatggtgtt
catccgtgctttgttgtctttgacatcttattgctgaacgacgagaagcttaccaacttg
cctctgcaacaaagggtggaaaaactgaaaggaataataaagccagtaccaggaagactt
caaatcatcgaaagaaaaacagcatctaaaaaagaggaagttattaatgcgttaaatgat
gcaatcgataaaagagaggaaggaatcgtaattaaggatccagaatctatctataaaccg
agtaaaagaaaaggaagtggttggctgaaaatcaaaccagactacatcgattcattaagt
gatcagttggatgtgctgatagtcggtggttactatggagttgggcgtcgtggtggaatg
gtttcccatttcctgtgtgctatagctgttcctccgcagcaaccaaatgaatatccatca
gtgttccactcattttgtaaggttgggtcaggatacagtttgaaggagctcaaagagctg
tgtgatgcccttgagcctcattggaagactttcgaccctaaaatgcctcccagcagcatc
atttttgctccaggattgaaggaaaaacccgatgtttggatagagccttcgaagtctaaa
atcgtacaactaaaggctgcggaaataacagagagtgaaaagtacaaatgcaaatgcacc
ctgaggtttccacgtgtcgatacaattcgcgatgacaagcattggtacgattgcatggat
ttggatgagttgagtagactgagggagatttctggaggatatctaacaaataaacaagtt
actgacgatggtacagaagaaccagttaaaaagaagaaaagaactgttaccaaattagag
caaccaaggaggatagctgggcatttcaagggagctgacgtgagctcaataaaagaggtc
tcaaatcttttcgaagaccacgaattttgtgtgatgaatggatcatcagagcatagtaaa
catgatttggaaaaaagaatagcagagcatggtggaaaatttgttcagaatgcaggcaag
gacactaactgcgtcatagctgaaaaagtcaacgtgcgtgttaaaaatataatcagctta
ggaaggcacgacgttgtctctgtttcctggctggtcgcgtgtcttaataaaggcaaagtt
ctggcgtacaaacctaatgaaatgatttttacttctgaaaagacaaagaaaatattctct
cttgaatatgacgaatttggagatagttacacgaaagagattgatgctaaaaatttgcaa
gaaatatttagaaacatggaaagcaaggacagggtccgttcaacagctgaagaagtagca
gaaatcgagttccgttatttccccaacgattccccttacggcatatttcgtggatgcaga
tcatttttcgataaatgggcagatcctgattgtccaaatgaagtgagaatttttttcgtt
tgctcgtttgtcagcccacttttttgcttgtcagcccaattttttgcttgtcagcccact
tttttgcttgtccgcacacttttttgcttgtcagcccaattttttgcttgtcagcccact
tttttgcttgtcagcccacttttttgcttgtcagcccacttttttgcttgtcagcccaat
tttttgcttgtcagcccaattttttgcttgtcagcccacttttttgcttgtccgcacact
tttttgattgtttgcttgcttgcttgctcgagcgcccgtccgacggcttgcattcttgtt
tcaaatactgcttgcaccattattaaaacagcaattgtcttcaaatcattactgactggc
tatttctctgcactagaccttcgcttccatggaggagacgtgatgaatcaatttagtcca
gggactacacacgtcattgtaagaaaaagcgatctttcaaggctgcccgtatttagacag
agaatcagaaatatgactaaaaagccacatatcgttacagaggactggatccaaagctgt
atagaaaaatttcagaaaattgatgagaagcattttgagcctttgtga
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