Rhizobium etli CFN 42: RHE_CH02835
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Entry
RHE_CH02835 CDS
T00317
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+) protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03030
DNA replication
ret03410
Base excision repair
ret03420
Nucleotide excision repair
ret03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHE_CH02835 (ligA)
03410 Base excision repair
RHE_CH02835 (ligA)
03420 Nucleotide excision repair
RHE_CH02835 (ligA)
03430 Mismatch repair
RHE_CH02835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ret03032
]
RHE_CH02835 (ligA)
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH02835 (ligA)
Enzymes [BR:
ret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHE_CH02835 (ligA)
DNA replication proteins [BR:
ret03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHE_CH02835 (ligA)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHE_CH02835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHE_CH02835 (ligA)
MMR (mismatch excision repair)
DNA ligase
RHE_CH02835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHE_CH02835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_ligase
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
ABC91603
UniProt:
Q2K6D3
LinkDB
All DBs
Position
complement(2957093..2959249)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEAR
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMPDQ
SIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRL
AEVKPYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgaaacgttgacgatcgaagaggctgctgccgagctc
gagcggctggcaagggagatcgcgcatcacgacgcgctttaccacggcaaagaccagccg
gaaatctcggacgcggattacgatgcgctgaagcgccgcaacgatgcgctggaagcgcgg
tttcccgagctgatccgtgaggacagtccgtcgcgtcgggtcggtgctgcgccctcggtc
actttctcgcctgtcgtccatgcgcggccgatgctgtcgctcgacaatacgttttcgcag
gaagacgtgcaggatttcgtcgccagcgtctatcgcttcctcggccgcatgccggaccag
tcgatcgcctttaccgccgaaccgaagatcgacggcctttccatgtcgatccggtacgag
aacggcaggctgacgacggccgccacccgcggcgacggcaccacgggcgagaacgtcacc
gccaacatccggacgatcgccgaaatacccaaccaattgccgaagggcgttcccgctgtc
gtggagatccgcggcgaggtctatatggccaagagcgacttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaatacggcggccgggtcgctc
cggcagctcgacgccaaggtgacggcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtccgacatgccggccgacacgcaattcgccatggtgcagacgttcaaggac
tggggcttcccggtcaatccgttgatgaagcggctgaattcggtcgccgacatcctggca
cattatgacgagatcggcctcaagcggccggatctcgattacgatatcgacggagtcgtc
tataaggtcgacagcctggaactgcagcagcgcctcggcttccgctcccgctcgccgcgc
tgggcgacggcgcacaaattcccggccgagcaggcctttaccgaggtcgagaagatcgag
atccaggtcggccgcaccggcgcgctgacgccggtggcgcggctgaagccgatcacggtc
ggtggcgtggtcgtcaccaatgcgacgctgcataatgaggattacatcaagggcatcggc
aatagcggtgagcgcatccggccggaggagcacgatatccgcgagggcgatacggtcatc
gtccagcgcgccggcgatgtcattccacagatcctcgatgtcgtcatggagaagcgcctc
gccgaggtgaagccttatgaattcccaaagatctgcccggtctgcggttcgcatgccgtg
cgcgaggtgaacgagaaaaccggcaagatggattcggtgcgccgctgcaccggcggcttt
atctgccgggcgcaggcgacggagcatctgaagcatttcgtctcgcgcaacgccttcgat
atcgaggggctcggttcgaagcagatcgacttctttttcgaaaacgaggatccgtctctg
cagatccgaacggcgcccgagatcttcaccctggagaagcggcagcaggattccctgacc
aagctggagaatatcgatggcttcggcaaggtcagtgtcggcaagctctatgccgcgatc
aacgaacggcgcagtattgcgctccaccgcttcatctatgcgctcggcatccgtcatgtc
ggcgaaactacggcgaagctgctggcgcgctcctatggcacctacgaagcctttgcgacg
gcgatgaaggaagcagcaccgctgtccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgtggcgcgcgccatggtcgaattctacaaggagccgcgcaatgtc
gaggtgatcggccgcctgctcgatgaagtaacgccagcggaggctgaacagccggtgacg
gcaggaagcccggtcgccggcaagaccgtggtcttcaccggctcgctggaaaaattcacg
cgcgacgaagccaaggcgagggccgaaagcctcggcgccaaggtggcgggatcggtgtcg
aagaagaccgacatcgtcgtcgccggccctggcgccggctccaagctcgacaaggcgcgc
gaactcggcgtgcagacgatggacgaggacgaatggctggcgctgatcagcgggtga
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integrated database retrieval system
