Rhizobium esperanzae: AMJ99_CH02999
Help
Entry
AMJ99_CH02999 CDS
T05681
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rez
Rhizobium esperanzae
Pathway
rez03030
DNA replication
rez03410
Base excision repair
rez03420
Nucleotide excision repair
rez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMJ99_CH02999 (ligA)
03410 Base excision repair
AMJ99_CH02999 (ligA)
03420 Nucleotide excision repair
AMJ99_CH02999 (ligA)
03430 Mismatch repair
AMJ99_CH02999 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rez03032
]
AMJ99_CH02999 (ligA)
03400 DNA repair and recombination proteins [BR:
rez03400
]
AMJ99_CH02999 (ligA)
Enzymes [BR:
rez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMJ99_CH02999 (ligA)
DNA replication proteins [BR:
rez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMJ99_CH02999 (ligA)
DNA repair and recombination proteins [BR:
rez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMJ99_CH02999 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMJ99_CH02999 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMJ99_CH02999 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMJ99_CH02999 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ANL04526
LinkDB
All DBs
Position
complement(2968300..2970456)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEAR
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEIEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRSEEHDIREGDTVIVQRAGDVIPQILDVVMEKRL
AGVKPYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEGPSLQIRTAPEIFTLEKRQQSSLTKLENIDGFGKVSVGKLYVAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGSYEAFATAMKEAATLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNIEVIGRLLEEVTPAEAEQPVTSGSPVAGKTVVFTGSLEKFT
RDEAKARAEGLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggccgctgccgagctc
gagcggctggcgaaagagatcgcgcatcacgatgcgctctatcacggcaaggaccagccg
gaaatctcggacgcggattacgatgcgctgaagcgccgcaacgatgcgctggaagcgcgt
tttcccgagctgatccgtgaggacagcccgtctcggcgggtcggtgctgcgccttcggtc
actttctcgcccgtcgttcacgcgcggccgatgctgtcactcgacaacaccttttcgcag
gaggacgtgcaggatttcgtcgccagcgtctatcgcttcctcggccggctgccggaccag
tcgatcgcctttaccgccgaaccgaagatcgacggactttcgatgtcgatccgctacgag
aacggcaggctgacgacggccgccacgcgcggcgacggcaccacgggcgaaaacgtcacc
gccaatatccggaccatcgccgaaatacccaaccaattgccgaagggcgttcccgcagtc
gtggaaatccgcggcgaggtctatatggccaagagcgatttcctggcgctgaaccggcag
atggaggcggagggtaagcagacctatgtcaatccgcgcaacacggcggccggatcgctg
cgccagcttgacgccaaggtgacggcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtcggacatgccggccgacacgcaattcggcatggtgcagaccttcaaggac
tggggttttccggtcaatccgctgatgaagcggctgaattcggtcgccgacatcctggcg
cattacgacgaaatcggcctcgagcgcccggatctcgattatgacatcgacggcgtcgtc
tataaggtcgacagcctggaattacagcagcgcctcggcttccgctcgcgttcgccgcgc
tgggcgacggcgcataaattcccggccgagcaggcctttaccgagatcgagaagatcgag
atccaggtcggccggaccggggcgctgacgccggtggcgcggctgaaaccgatcacggtc
ggcggcgtcgtggtcaccaatgcgacgctgcataatgaggattacatcaagggcatcggc
aatagcggtgagcgtattcggtcggaggagcacgatatccgcgagggcgataccgtcatc
gtccagcgcgccggcgatgtcattccacagatcctcgatgtcgtaatggagaagcgcctc
gccggggtgaagccttatgaattcccaaagacctgcccggtctgcggttcgcatgccgtg
cgcgaggtgaacgagaaaaccggcaagatggattcggtgcgccgctgcaccggcggcttt
atctgccgggcgcaggcgacggagcatctgaagcatttcgtttcgcgcaacgccttcgat
atcgaggggctcggttcgaagcagatcgacttcttctttgaaaacgagggtccgtcgctg
cagatccgcacggcgcctgagattttcacgctggagaagcgccagcaatcctcgctcacc
aagctggaaaatatcgacggcttcggcaaggtcagcgtcggcaagctctatgtggcgatc
aacgagcggcgcagcatcgcgctccatcgcttcatctatgcgctcggcatccgccatgtc
ggcgagaccacggcgaagctgttggcgcgctcctacggctcctatgaggcttttgcgacc
gcgatgaaggaggcggcaacgctttccggcgatgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgtggcgcgcgccatggtcgagttttataaggagccgcgcaatatc
gaggtgatcggccgcctgctcgaggaggtgactcccgcggaggccgaacagccggtcacg
tcaggcagccccgtcgccggcaagacggtggtcttcaccggttcgctcgaaaaattcacc
cgcgacgaggcgaaggcgagggccgaaggtctcggcgccaaggtagcgggctcggtgtcg
aaaaaaaccgatatcgtcgtcgccggccctggcgccggctcgaagctcgacaaggcccgc
gaactcggcgtccagacgatggacgaagacgagtggctggcgctgattggcgggtag
DBGET
integrated database retrieval system
