Rhodococcoides fascians D188: A3L23_04750
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Entry
A3L23_04750 CDS
T04328
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rfa
Rhodococcoides fascians D188
Pathway
rfa03030
DNA replication
rfa03410
Base excision repair
rfa03420
Nucleotide excision repair
rfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3L23_04750 (ligA)
03410 Base excision repair
A3L23_04750 (ligA)
03420 Nucleotide excision repair
A3L23_04750 (ligA)
03430 Mismatch repair
A3L23_04750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfa03032
]
A3L23_04750 (ligA)
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_04750 (ligA)
Enzymes [BR:
rfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3L23_04750 (ligA)
DNA replication proteins [BR:
rfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3L23_04750 (ligA)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3L23_04750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3L23_04750 (ligA)
MMR (mismatch excision repair)
DNA ligase
A3L23_04750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3L23_04750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Wyosine_form
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
AMY56051
LinkDB
All DBs
Position
complement(5019244..5021424)
Genome browser
AA seq
726 aa
AA seq
DB search
MSVPSDNLRHVPEPTELPAGTDDAAEAAGVELDPATPADRERWQTLAEEVRGHQFRYYVR
DSPIVSDGEFDALLRELNDLEQAHPDLRTADSPTQLVGGGFATEFTAVDHLERMLSLDNV
FDHDELRAWAKRVETEAGPDLHYLCEVKIDGVALNLVYENGTLVRGATRGDGRTGEDVTL
NARTIDDIPDTLTGSAEYPIPELLEVRGEVFFRLEDFQALNAALVEEGKPPFANPRNSAA
GSLRQKNPAVTSKRRLGMICHGFGRMVGFTPDSQWHAYEALQAWGLPISTHTTRVQGIDA
VVEKVEYWDKHRHDVEHEIDGLVVKIDEMSLHRRLGTTSRAPRWAIAYKYPPEEVTTTLL
DIRVSVGRTGRVTPFAYMTPVLVAGSTVSLATLHNASEVKRKGVLIGDTVTIRKAGEVIP
EVLGPVVDARTGDETEFVMPTECPECSTPLAPAKDGDADLRCPNSQFCPAQRRERVFFVA
ERQRFDIEGLGYEAATDLLATGAIEDEGDLFSLTEEDLMKTAIFRTKSGALSATGRKLLD
NLSSAKNQPLWRVLVSLSIRHVGPSAARALAGEFGSLERIEAASVEELSAVDGVGGTIAA
AVSEWFEVDWHRAIVQKWRNAGVRMEDERDASIERNLEGLSIVVTGSLESYSRDEAKEAI
LLRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEAGFTRLLTEGPDAVSEPPT
DTDVSQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgccgtcggataatcttcgtcacgtgcctgagccgaccgaactgcctgcagga
accgacgatgccgccgaggctgccggagtcgaactcgatcctgccacccctgccgaccgc
gagcggtggcagacactggccgaggaagtacgtggacatcaatttcgctactacgtgcgt
gattcgcccatcgtctcggacggtgaattcgatgccctgctgcgcgaactgaacgatctc
gaacaagcccacccggacctgcgcacggccgattcaccgacccaactcgtgggcggtggt
ttcgcgacggagttcaccgccgtcgaccatctggaacgaatgctgagcttggacaacgtg
ttcgatcacgacgagctccgtgcgtgggccaagcgggtcgagaccgaggccggtccggat
ctgcactacctgtgcgaagtcaagatcgacggtgtggcgttgaacctggtgtacgagaac
ggcactctggtgcgcggtgcgacccgaggtgacgggcggaccggcgaggacgtcacgctc
aatgctcggacgatcgacgacatacccgataccttgaccggcagcgccgaatatccgatc
ccggagctgctcgaggtgcgcggtgaggtgttcttccggctcgaggactttcaggcgctc
aacgcggcgctcgtcgaagagggcaaacccccgttcgccaatccgcggaactcggcggcg
ggctcgctgcgccagaagaacccggccgtgacctcgaagcggcgtctcggcatgatctgt
cacggcttcggacggatggtcggcttcacccccgattcgcagtggcacgcctacgaggct
ctgcaggcgtggggtctgccgatctcgacccacacgacgcgcgtgcaaggcatcgatgcc
gtcgtcgagaaggtcgagtactgggacaagcaccgccacgacgtcgagcacgagatcgac
ggcctggtggtcaagatcgacgagatgtcgttgcaccgtcggctcggaacgacgtcgcga
gcaccgcggtgggccatcgcgtacaaatacccacctgaggaagtcaccaccaccctgctg
gacattcgcgtcagcgtcggccgaaccggtcgagtgactccgttcgcgtacatgacgccg
gtgctcgtcgcggggtccacggtgtctctcgcgaccctgcacaacgcgtcggaggtcaag
cgcaagggtgttctgatcggtgacaccgtcacgattcgcaaagcgggagaggtcattccg
gaggtgctcggcccggtcgtcgacgccaggaccggcgacgagaccgaattcgtcatgccc
accgaatgcccggaatgctcgacgccgttggcaccggcgaaggacggcgacgcggacctg
cgctgccccaattcgcagttctgcccggcgcaacgccgtgagcgtgtgttcttcgtggcc
gaacggcagcgtttcgacatcgagggtctcggatacgaagcggcgacggatcttctggcc
accggtgcgatcgaggacgagggcgatttgttctcgctcaccgaagaagacctgatgaag
acggcgatcttccgcacgaaatcgggcgcattgtcggccaccggtcgcaaactgctcgac
aatttgtcctccgccaagaatcagcctctgtggcgagtgctggtgagcctgtccattcgc
cacgtcggcccctccgccgcacgagccctcgccggagaattcggcagcctcgagcgcatc
gaagcagcgtccgtcgaggagttgtcggcggtggacggggtgggcggcaccatcgcggct
gctgtgtccgaatggttcgaggtcgactggcaccgggccatcgtgcagaaatggcggaat
gccggtgtgcggatggaggacgagcgagacgcctccatcgagcgcaatctggaaggcctg
tcgatcgtcgtcaccggttcgctcgagtcctactcgcgcgacgaggccaaagaagcgatc
ttgctgcggggcggaaaggccgccggttcggtttcgaagaagacggcgttcgtcgtcgtc
ggtgaatcgcccggttcgaagcacgacaaggccgtcgagctcggcgtaccggtcttggac
gaggcagggttcacgcgtctgttgaccgagggcccggacgcagtgtcggagccgccgacg
gataccgacgtgtcgcagtag
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