Roseburia faecis: ACIRUI_04390
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Entry
ACIRUI_04390 CDS
T10789
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rfc Roseburia faecis
Pathway
rfc03030
DNA replication
rfc03410
Base excision repair
rfc03420
Nucleotide excision repair
rfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACIRUI_04390 (ligA)
03410 Base excision repair
ACIRUI_04390 (ligA)
03420 Nucleotide excision repair
ACIRUI_04390 (ligA)
03430 Mismatch repair
ACIRUI_04390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfc03032
]
ACIRUI_04390 (ligA)
03400 DNA repair and recombination proteins [BR:
rfc03400
]
ACIRUI_04390 (ligA)
Enzymes [BR:
rfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACIRUI_04390 (ligA)
DNA replication proteins [BR:
rfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACIRUI_04390 (ligA)
DNA repair and recombination proteins [BR:
rfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACIRUI_04390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACIRUI_04390 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACIRUI_04390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACIRUI_04390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
Nlig-Ia
HHH_2
BRCT_2
Lar_restr_allev
RUBY_RBDX
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
XKQ66183
LinkDB
All DBs
Position
complement(873273..875243)
Genome browser
AA seq
656 aa
AA seq
DB search
METEKQRIEELVKQLNAASAAYYNGQDEIMPNYEWDALFDELTTLEEKTGYIIKDSPTQN
AGYEESGSGQKEPHEYPALSLAKTKQVEELQQWAGAYPIWLSWKLDGLTLVLTYDNGNLV
KILTRGNGNLGTNITFLKGAIGGFPQKISYQGHLVVRGEAAISYTDFAQINDMIEDDDEK
YANPRNLASGTLNLEDPAEVKARHVRFHAFTLVHLDEPMVSWGERMHFLEKLGFDVVDRE
ATTAQKLPEAIDRWTKLVESGKMDIPVDGLVICYDDTDYAASGSVTGHHATRAGFAFKWQ
DEAVDTKLKYIEWSCAVSTISPVAVFEPVQIEGTTVSRASLCNISEIERLGIGKECTLSV
IKANKIIPKCIAVKDAVGAPEIPSQCPVCHAPTKVHVSENSGTKTLHCTNPDCTAKNVKK
FTRFVSKWGMDIDGLSIQTMLRFMNAGFIHEFADIFRLKEHFGEISQMEGFGEKSVANME
QSIEKSRQVHPVNFIFALCIPLIGVDAGKKIVAAIGFEGFLQRLHQGDGFEDIEGIGAER
SRSIVTWYQNEKNHSGFEDLLHELSIEHVEVQDTSSGSCAGLSFVITGDVHHYKNRDEFK
AYVESQGGKVTGSVSKKTAYLVNNDVESASSKNRKAKELGIPIISEDTFIEQFGGR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagaaaagcaacggattgaagaactggtaaaacagttgaatgcagcatcagct
gcgtattataacggacaggatgaaatcatgccaaattatgagtgggatgctttgtttgat
gagcttaccacgctggaagaaaaaaccggatatattataaaggacagcccgacgcagaat
gccggatatgaagaatccggaagcggacaaaaagaaccgcatgagtatccggcactttct
ctggcgaagaccaaacaggtggaagaactgcagcaatgggcgggagcttatccgatctgg
ctgtcatggaaactggacggacttacgctggttctgacgtatgataacggaaatcttgta
aaaattcttaccagaggaaatggaaacctgggtaccaacattacatttttaaagggtgcg
atcggaggattcccgcaaaagatttcgtatcaggggcatctggttgtgcgaggagaagct
gccatatcctatacagattttgcacagatcaacgacatgattgaggatgacgatgaaaaa
tatgcaaatccgcgaaatctggcatccggaacgctgaatctggaagatccggcagaagtg
aaggcacgccatgtcaggtttcatgcatttacactggtgcatctggatgagccgatggta
tcgtggggagagcggatgcactttctggaaaaactgggatttgatgtggtagacagggaa
gcgacaaccgcccaaaaacttccggaagccattgaccgatggacgaaacttgtagagagc
ggaaaaatggatattccggtagatggtctggtgatctgttatgatgatacggattatgcg
gcatcgggaagcgtgaccgggcatcatgcgacacgtgccggttttgcgttcaaatggcag
gatgaggctgtagatacaaaactaaagtatatcgaatggtcgtgtgcggtatcaacaatt
tccccagttgccgtgtttgaaccggtacagattgagggaacgacagtatccagggcatcg
ctatgtaatatcagtgagatcgagcgtctggggattggaaaagagtgcacactttctgtg
atcaaagctaataagatcattccgaaatgtattgcggtaaaagatgctgtaggtgctccg
gagattccatcccagtgtccggtgtgccatgcaccgacaaaagttcatgtgagtgaaaac
agtggcacaaagaccctgcattgtaccaatccggactgtacagccaaaaatgtcaagaaa
tttacccgttttgtcagcaagtgggggatggatattgacggtctttccattcagacgatg
ctccgttttatgaatgcgggatttatccatgaatttgcggatattttccgtttgaaagag
catttcggggagatcagccagatggagggctttggtgaaaaatctgtggcaaatatggaa
cagtccattgaaaaaagccggcaggtacatccggtgaactttatatttgccctgtgcata
ccgctgatcggtgtggatgccgggaaaaaaattgttgccgccattggttttgaaggcttt
ttgcaacgtctgcatcagggggacgggtttgaggatattgaggggatcggagcggaacgt
tcccgatcaattgtaacctggtatcagaatgaaaaaaaccacagtgggtttgaggatctg
cttcatgaactttcgatagaacatgtagaagtgcaggatacttcttccggaagctgtgcg
ggactgagttttgtgatcaccggagatgtgcatcactataaaaacagggatgaatttaag
gcctatgtagaaagccagggcggaaaagtgacaggaagtgtctcaaaaaagacggcatat
cttgtcaacaatgacgtggaatccgcatcatctaagaatcgtaaggcaaaagaactggga
attccgattatttccgaagatacatttatagaacaatttggtgggaggtag
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integrated database retrieval system
