Rhynchophorus ferrugineus (red palm weevil): 143193166
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Entry
143193166 CDS
T11283
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143193166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rfg03041
]
143193166
Spliceosome [BR:
rfg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143193166
Complex C
U5 SnRNP specific factors
143193166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
143193166
NCBI-ProteinID:
XP_076255297
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MDADLYDEFGNYIGPELDSDDDEEEEQETHDDDEQQEYDDEQMEDEPQPMAIVLHEDKQY
YPSALQVYGPEVETIVQEEDAQALDVPLVEPVKKKKFQLKEQDLPETVYSTEFLADMMDN
TSLIRNVALIGHLHHGKTTFVDCLIRQTHPVYQDNEEKNLRYTDILFTEQERGCSIKSIP
VTLLLQDIKNKSYLMNIFDTPGHVNFSDEVTAAMRLCDGVVLFIDAAEGVMLNTERLLKH
AVQEQMQITVCINKIDRLMLELKLPPQDAYYKLRHIVEEINGLLTLYSDDANPQIVSPVL
GNVCFASSQYGVCFTLKSFANIYNIYYGDVNVDEFSKRLWGDIYFNPKNRKFTKKAPHNS
AQRSFVEFILEPLYKVFAQVVGDVDTTLPKVLDELGIKLNKNEMKLNIRPLLRLVCNKFL
GDFNGFVNMCVEHIKSPLENAKRKVDHIYTGPNTTKVYDDMVSCDQEGLLMVHSSKMYPT
EDCTFFQVLGRVMSGTLHAGTDVRILGENYTLQDEEDSRILTVGRLWIYESRYKIELNRV
PAGNWVLIEGIDQSIVKTATITDLTIHNDLYIFRPLKFNTQSIIKIAVEPVNPSELPKML
DGLRKVNKSYPLLTTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVVFCE
TVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENENVQIGWNKKKLGEFFQTKYDW
DLLAARSIWAFGPDNTGPNILVDDTLPSEVDKGLLSSVKDSIVQGFQWGTREGPLCEEPI
RNAKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYLFVEVQAPADCVS
AVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHW
QIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSQDVSINKFFDDPMLLELARQ
DVMLNYPLL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgatttatatgatgaattcggtaattacattggtcctgaattagatagtgat
gatgatgaagaggaagaacaggaaacacatgatgatgatgaacagcaggagtatgatgat
gaacaaatggaagatgaaccacagccaatggctatagttcttcatgaggacaaacaatat
tatccttcagctttacaagtatatggcccagaggtagaaactatagtacaagaggaagat
gcccaggctttggatgtaccacttgttgaacccgttaagaaaaagaagtttcaattgaaa
gaacaagacttaccagagactgtgtatagtacagaatttttagctgatatgatggataat
acatctcttattagaaatgttgcattaataggtcatctacaccatgggaaaaccaccttt
gtagactgtttaattcgacaaactcatcctgtgtaccaggataatgaagaaaaaaattta
agatacacagatattttgtttacagaacaggaaagaggttgttcgattaaatccattcca
gtcacattacttttacaagacataaagaacaaaagctatttgatgaatatctttgatacc
ccaggacatgtcaatttctcagatgaagtaacagcagcaatgcgtctatgcgatggtgta
gtattatttattgatgcagctgagggtgttatgttaaacactgaacgtcttttaaagcac
gctgtccaagaacaaatgcaaataacagtgtgtattaacaaaatagacaggttgatgctg
gagttaaagcttcctcctcaagatgcatattataaattgaggcatattgttgaagaaata
aatgggctgttaactttgtactcagatgatgctaatccacaaattgtatctccagttctt
ggcaatgtttgttttgccagttctcaatatggtgtgtgcttcactcttaagtcatttgca
aacatttataacatctattatggagatgtaaacgttgacgaattttcgaaaagattgtgg
ggagatatttatttcaatcccaagaatcgtaaatttaccaaaaaagcacctcataattca
gctcagaggagttttgttgaatttattttggagcctctttacaaagtatttgctcaagtt
gttggtgatgtggatacaacgttaccaaaggtgttggacgagttgggaattaaattgaac
aagaatgagatgaagctgaacattcgaccacttcttagacttgtctgtaataaattcctg
ggtgattttaatggttttgttaatatgtgtgtggaacatatcaaatccccactggagaat
gcaaagaggaaagttgaccacatttatactggtccaaatactaccaaagtatatgatgat
atggttagttgtgatcaggaaggattactgatggtccatagctcgaaaatgtatccaact
gaagactgtacattcttccaagtactgggtagagtaatgagtggcacccttcatgccgga
actgatgtgagaattcttggtgaaaattataccctacaagatgaagaggattcgagaata
ttaactgttggtcgtttgtggatatatgaatcgaggtacaagattgagttaaatagggta
ccagctggtaactgggtactaattgaaggtatagatcagtccatagtgaagacagcgaca
ataacagatctaactatacataatgatttgtacatatttagaccactgaaattcaataca
cagagtattataaaaattgctgtggaacctgtaaatccgtctgaattaccaaaaatgtta
gatggtttgaggaaggttaacaagtcatatccactactcactactagagtagaagaaagt
ggagaacatgttattttgggaacaggggagttatatttagattgtgtaatgcatgatctg
agaaaaatgtattcagaaatagatataaaagtggctgatccagtggttgtattctgtgaa
accgtggtggaaacttcaagtttgaaatgttttgctgaaacaccaaacaagaaaaacaaa
ttgacgatgatagccgaacctctggagaaaggtttggctgaggatattgagaatgagaac
gttcaaataggttggaataaaaagaaactgggcgaattcttccaaaccaaatacgattgg
gatttgttggctgcaagaagtatatgggcttttggccctgacaacactggtccaaatatc
ctggtagatgatactttaccttctgaagtagataaaggattattgagttctgttaaagat
tctatagttcaaggcttccagtggggaacaagagaaggacctctatgtgaagaacctatt
aggaatgccaagtttaaaatattagatgctgttatcgcccaagaacctcttcatagaggt
ggtggtcaaattattccaactgcaagaagagtagtgtattcagcatttttgatggcaact
cctagattaatggagccctatttattcgtggaagtacaagctccggctgattgtgtatct
gctgtttacacggttttagcaaagagacgtggtcatgttactcaagatgcccctgtgcca
ggatcgccgctgtataccatcaaagcattcattccagctattgatagttttggttttgag
actgatttaagaacacacacacaaggacaagctttttgtttatctgttttccaccactgg
cagattgtccctggtgatcctttggataaatccattgttatcagaccactggagccccaa
ccagccacacatttagctagagaattcatgatcaagactagaagaaggaaaggtttgagc
caggatgtatctatcaacaagttctttgacgaccctatgttgttggagttggccaggcaa
gacgtcatgcttaattatccactgttgtaa
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