Roseomonas fluvialis: Rmf_10310
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Entry
Rmf_10310 CDS
T08992
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03030
DNA replication
rfl03410
Base excision repair
rfl03420
Nucleotide excision repair
rfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmf_10310 (ligA)
03410 Base excision repair
Rmf_10310 (ligA)
03420 Nucleotide excision repair
Rmf_10310 (ligA)
03430 Mismatch repair
Rmf_10310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfl03032
]
Rmf_10310 (ligA)
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_10310 (ligA)
Enzymes [BR:
rfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rmf_10310 (ligA)
DNA replication proteins [BR:
rfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rmf_10310 (ligA)
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rmf_10310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmf_10310 (ligA)
MMR (mismatch excision repair)
DNA ligase
Rmf_10310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rmf_10310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
BDG71102
LinkDB
All DBs
Position
complement(1041512..1043659)
Genome browser
AA seq
715 aa
AA seq
DB search
MTPRDPATLTEAEAAEELAALAAEIARHDALYHGQDAPEISDADYDALVRRNRAIEARFP
ALVRADSPSRRVGAATAEGFAKSRHGEPMLSLNNVFSAEDFAEFCASIRRFLGLGPEEPL
RFVGEPKIDGLSINLLYEDGAFVKGATRGDGIEGEDVTANLLTIADLPKRLHAPFPARIE
IRGEVFMDKADFLAFRTTQERALAEREARRARGDKLGDAVIVPANPRNAAAGSVRQLDAR
ITASRPLKLFAYAMGAASEAPAESHHAFLQRLEAWGFAVNPLSTLLDNEADAEAFQRRIG
DGRASLGYDIDGVVYKLDRLDWQRRLGFVGRAPRWATAWKFPAEQATTVLEAIEIQVGRT
GALTPRAVMQPVTVGGVVVRHATLHNEDEIARKDIRIGDTVRIQRAGDVIPQVVEVLLDK
RPPSAQPFAFPTTCPACGSHAIRDGEDVVRRCTGGLVCPAQAVERLKHFASRRAMDIEGL
GEENIQKLFDEGLVRSPADIFRLAQHADRMRQWEGWGARSKKADDARKVAKLLDAIEARR
NVPLERFIFALGIRRIGEQNAKLLARHYHTLEDWRARMIAAHIIGSEAREELGSIQGIGP
AIAEELVEFFAEPRAVAALDDLAREAPPLPAESSAAADSPFAGKTLVFTGTLETLSRDEA
EAQAERLGAKVTKSVSKKTDFVVVGADAGSKATKATELGLRILTEAEFRDLAGIT
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcgcgaccccgccacgctcaccgaagccgaggccgccgaggaactcgccgcg
ctggccgccgagatcgcccgccacgacgcgctgtatcacggccaggatgcgcccgagatc
agcgacgccgactacgacgcgctggtgcggcgcaaccgcgcgatcgaagcgcgcttccct
gccctcgtgcgcgccgacagcccatcccgccgcgtcggcgccgccacagccgaaggcttc
gcgaagtcccgccacggcgaacccatgctgtcgctgaacaacgtgttcagcgcggaggac
ttcgccgagttctgcgcctcgatccgccgcttcctcggcctcggcccggaggaaccgctg
cgcttcgtgggcgagcccaagatcgacggcctatcgatcaacctgctgtacgaggacggc
gccttcgtgaagggtgccacgcgcggcgatggcatcgagggcgaggacgtcacggccaac
ctgctgaccatcgccgacctgccgaagcgcctgcacgcccccttccccgcccgcatcgag
atccgcggcgaggtcttcatggacaaggcggatttcctggccttccgcaccacgcaggaa
cgcgccctggccgagcgcgaagcccgccgcgcgcgtggcgataagctcggcgatgcggtg
atcgtgccggccaatccgcgcaacgccgcagccggttccgtgcgccagctcgacgcgcgc
atcaccgcctcgcgcccgctcaaactgttcgcctatgccatgggcgccgcgagcgaagca
ccggccgagagccaccatgccttcctgcagcgccttgaagcctggggcttcgcggtgaac
ccgctctcgaccctgctcgacaacgaagccgatgcggaggccttccagcgccgcatcggc
gacgggcgcgcatccctcggctacgatatcgacggcgtggtctacaagctggaccgcctc
gactggcagcggcggcttggcttcgtcggccgcgcgccgcgctgggcgaccgcctggaaa
ttccccgccgagcaggccaccaccgtgctcgaagcgatcgagatccaggtcgggcgcacc
ggcgcgctgacgccacgcgcggtgatgcagccggtcaccgtcggcggtgtcgtggtgcgc
cacgcgacgctgcacaacgaggacgagatcgcccgcaaggacatccgcatcggcgacacc
gtccgcatccagcgcgccggcgatgtcatcccgcaggtggtcgaagtcctgctcgacaaa
cgcccgcccagcgcccagcccttcgccttccccaccacctgcccggcctgcggcagccat
gccatccgcgacggcgaggacgtggtgcgccgctgcaccggcggcctggtgtgtcccgcg
caggcggtcgagcgcctcaagcatttcgcgtcccgccgcgccatggatatcgagggcctg
ggtgaggagaacatccagaagctgttcgacgagggcctggtgcgcagcccggccgacatc
ttccgcctggcacagcacgcggatcggatgcggcaatgggagggctggggcgcgcggtcg
aagaaggccgacgatgcgcgcaaggtcgccaagctgctcgacgccatcgaggcgcgccgc
aacgtcccgctggaacgcttcatcttcgcgctgggcatccgccgcatcggcgaacagaac
gcgaagctgctggcacgccactaccacacgctcgaggactggcgcgccaggatgatcgcc
gcccacatcatcgggtcggaagcgcgcgaggagctcggctccatccagggcatcggtccc
gccatcgccgaggagctggtggaattcttcgccgaaccgcgcgcggtcgcggcgctcgac
gacctggcgcgcgaggccccgccgctgcccgcggaatccagcgctgcggccgacagcccc
ttcgccggcaagacgctggtcttcaccggcacgctcgagaccctgtcgcgcgatgaggcc
gaggcgcaggccgaacgcctcggcgccaaggtcacgaaatcggtgtcgaagaagaccgac
ttcgtcgtggttggcgccgatgccgggtcgaaggcgaccaaggccacggaactcggcctg
cgcatcctgaccgaggcggaattccgcgacctggccggcatcacctga
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