Reinekea forsetii: REIFOR_02002
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Entry
REIFOR_02002 CDS
T05208
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03030
DNA replication
rfo03410
Base excision repair
rfo03420
Nucleotide excision repair
rfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
REIFOR_02002 (ligA)
03410 Base excision repair
REIFOR_02002 (ligA)
03420 Nucleotide excision repair
REIFOR_02002 (ligA)
03430 Mismatch repair
REIFOR_02002 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfo03032
]
REIFOR_02002 (ligA)
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_02002 (ligA)
Enzymes [BR:
rfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
REIFOR_02002 (ligA)
DNA replication proteins [BR:
rfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
REIFOR_02002 (ligA)
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
REIFOR_02002 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
REIFOR_02002 (ligA)
MMR (mismatch excision repair)
DNA ligase
REIFOR_02002 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
REIFOR_02002 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ATX77137
UniProt:
A0A2K8KQY3
LinkDB
All DBs
Position
complement(2155309..2157333)
Genome browser
AA seq
674 aa
AA seq
DB search
MSVVRTQYLELIEQLSRYDYEYYVLNESTVPDAEYDRLMLALTAIELDHPDWITPSSPSQ
RVAGQAAEGFVTVAHRVPMLSLDNAFSGEDLAAFVKRLQDRLNNPASIEFACEPKLDGIA
VSLLYEQGQLVRGATRGDGSTGEDITSNVRTIRSIPLQLQGDDWPQELEVRGEIYMPKAG
FERMNRLALARDEKVFVNPRNAASGSLRQLDSKLTALRPLEMCCYSVGYSAGGELPATQS
ELMAQFGRWGLNINAEQAVVQGIEGIEAYYQQLETRRDSLAYEIDGIVYKVNNFALQNRL
GFVSRAPRWAIARKFPAQEEMTRLLAVEFQVGRTGALTPVARLEPVFVGGVTVSNATLHN
MDEIERLDVRIGDRVIVHRAGDVIPKVARVVVADRPATAERIEVPAVCPECASKVERIEG
ESVMRCTGGIFCSAQRREALKHFVSRKALDIDGCGEKIIDALLSANLIHSASALFELQPA
QLIGLERMGNKSVEKLLAAIEQSKHTSLARFLFALGIREVGETTARNLARYFATMDKLMA
ATEEQLLEVEDVGPKVAAHVVSYFSEPQNRVEVARLIALGVHWDDEVVSEQALLLSGQTW
VVTGKIDQMSRDEAKDYLLRLGAKVAGSVSAKTTQVVAGPGAGSKLNKATELNIPVMDEA
DFIRWLTDQGLWQA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtggttcgcacccagtatctggagttgatcgaacagctctcccgctacgattac
gaatattacgtgctcaatgaatcgaccgtccccgatgccgaatacgatcgtctgatgctg
gcattaaccgccatcgagctcgaccatccggattggattaccccaagctcaccgagtcag
cgggtcgcgggccaggcggccgaaggcttcgtcacggtcgcccaccgggtgccgatgctg
tccttggacaatgccttcagtggtgaggatctggccgcctttgtcaaacggctccaagac
cggctcaataaccccgcctcgatcgagtttgcctgtgagcctaagttggacggcatcgcc
gttagcttgctctatgagcagggtcaactggtgcgcggagcgactcgcggcgatggctcg
acgggcgaggatatcaccagcaacgtgcgtaccatccgcagtatccccttgcagttacag
ggcgacgactggcctcaagagctagaagtgcgcggtgagatctatatgcccaaggccggt
tttgaacggatgaatcgcctggccttggcgcgcgatgagaaggtatttgtcaatccacgc
aatgcagcctcgggcagcctgcgccagctcgactctaagctgaccgcgctgcgcccgctg
gaaatgtgctgttattcggtcggctactcagccgggggcgagttgcccgctacccagagt
gaactgatggctcaattcggccgttggggcttgaatataaatgccgaacaggccgtcgtg
cagggcatcgagggcatcgaggcctactatcaacagctcgaaacccggcgcgacagtttg
gcctatgagatcgacggcatcgtctacaaggtcaataacttcgccctgcagaaccggctg
gggttcgtctcgcgggccccgcgctgggccatcgcgcgtaaattcccggcgcaggaagaa
atgacccgactgctcgccgttgagtttcaggtcggccggactggcgccctaacgccggtc
gcgcggcttgaaccggtttttgtcggcggggtcacggtcagtaatgccacgctgcacaat
atggatgaaatcgaacgtttggatgtgcgcattggcgatcgagtgattgtccatcgcgcc
ggcgatgtgatccccaaggtcgcgcgtgtcgtggtggccgatcgaccagctaccgccgaa
cggattgaggtgccggcagtctgtcccgagtgcgcctccaaggttgagcggatcgagggt
gagtcggtcatgcgctgtactgggggcattttttgcagtgcgcaacggcgcgaagcgctc
aaacacttcgtctcgcgcaaggctctagatatagacggttgcggtgaaaaaattatcgac
gcactgcttagtgccaacctgattcattcggccagtgccctgttcgagttgcagcctgca
cagctgattggcctggagcgcatgggcaacaagtcggtcgagaagctgttagcggccatc
gagcagagtaagcacaccagcctagcgcgctttctatttgccttgggcatccgcgaggtc
ggcgaaaccaccgcgcgcaatttggcgcgttattttgctaccatggataaactgatggcc
gccactgaagagcagctcctggaagttgaggacgtcggccccaaggttgccgcccacgtg
gtgagttatttctccgagccgcagaaccgtgtcgaagtcgcgcgtttgatcgccctgggt
gtgcactgggacgatgaggtcgtctccgagcaggcgctgttgctcagtggccaaacctgg
gtggtgaccggtaagatcgaccagatgagtcgcgacgaggctaaagactatctgcttcga
ctgggcgccaaggtggctggcagcgtatcagcaaaaaccacccaggttgtcgcagggccc
ggagcaggcagtaaattgaacaaggccaccgaactcaatattccggtgatggacgaggcg
gactttattcgctggctgaccgaccaggggctctggcaggcttaa
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