Rhodoferax ferrireducens: Rfer_3430
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Entry
Rfer_3430 CDS
T00334
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr00300
Lysine biosynthesis
rfr00550
Peptidoglycan biosynthesis
rfr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Rfer_3430
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rfer_3430
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Rfer_3430
Enzymes [BR:
rfr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Rfer_3430
Peptidoglycan biosynthesis and degradation proteins [BR:
rfr01011
]
Precursor biosynthesis
Amino acid ligase
Rfer_3430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
RraA-like
Motif
Other DBs
NCBI-ProteinID:
ABD71139
UniProt:
Q21SW4
LinkDB
All DBs
Position
complement(3818229..3819845)
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AA seq
538 aa
AA seq
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MLEFQTPIEAVAWLRSRVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGAC
LVERLGAEAYAFSSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWL
AQALSNLKLVTPIPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDP
VLLQQALRRFVDRGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYW
QVKASLFQWPGLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAEARLQACDIVHDAPG
LRFTVLEHGPDGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVASCA
DLTAVPGRMECWGAPGQPLAAVDYAHTPDALGKALQALRPLADQRGGRLWCVFGCGGDRD
TAKRPLMGAIAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPDRARAIAQA
IAQAAPQDVLLIAGKGHEDYQEVAGQRLPFSDAEQVRRALGQWVSPDAGPTAEPGAQA
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagttccaaacgcccattgaggctgtcgcctggttgcgcagccgtgtcactggc
acgctgcaaaccgacagccgcaagctgcagcccggcgacggcttcattgcctggcccggc
gcggctgctgatgcgcgtcagtttgtggcgagtgccttggccagcggcgctggcgcctgc
ctggtcgagcgcttgggcgccgaggcttatgccttcagcagcgacaaggtcgccgcttac
gccaatctcaaagccgccagtggcctgattgccgccgcgtatttcgaccagccctcgcaa
caactggacgtgctggcagtgaccggcaccaacggcaaaacatccactgcctggtggctg
gcacaagcgctatcgaatttgaagcttgttacgcccattccatgcgggttggtgggtact
ttaggcataggaacaccgccgccaccagcgtctggacagccgcccgtcgggcttgtcgca
gcgcacggcgctgatcccctcgccggcatggtggcgaccggcctgaccacgcccgatccg
gtgctgctgcagcaagccttgcggcgctttgtggaccgcgggttccaagcttgcgcgctg
gaggcgtcctccatcggcctgcaagaacagcggctgaacggcacccacatccggaccgct
atcttcaccaacttcacgcaagaccatctggattaccacggcgccatggcggcttattgg
caggtcaaggcgagcctgtttcagtggccgggactgcagtcggctgtcatcaatattgat
gacccgcagggtgctgagttggctgaaacgctgcgcggcaaactgctcgatgtctggact
gtgtcttgcgttgcagaggcccggctgcaggcctgcgacattgttcatgatgcgccgggt
ttgcgctttacggtgctggagcacgggcctgacggcgcgaacggcccaggcggggcgggt
cagcgccatgtgctgcagacccggctgatcgggagctacaacgtcgccaacctgttgggc
gtgatggcggccatgcgttgcctgggcgtgccgctggcagcggtcgtcgcgtcctgtgcc
gacttgactgcggtgcccggacgaatggaatgttggggggcgccaggccaaccgctggcc
gcagtggactacgcccacacgcccgacgccctgggcaaagcactgcaggcgctgcgcccc
ttggctgatcagcgcggcggtcggctctggtgtgtttttggttgtggcggtgaccgcgat
acggccaagcgacccctgatgggcgcgatcgcggccagccacgccgactgcgtggtggtc
accagcgacaacccgcgcagcgaaaggcccgatgccatcatcagccagatattgcttggc
ctgaccggttaccccgcgctgacggtcgaacccgaccgggcgcgggcgattgcacaggcg
atcgcgcaggccgcaccccaggatgtgctgctgatcgccggtaaaggccatgaagactac
caggaggtggcgggccagcgcctgccgttctcggacgccgagcaggtgcggcgggcattg
ggccagtgggtttcgcctgacgctggaccgaccgccgagccgggagcgcaggcatga
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