Rubrivivax gelatinosus: RGE_24120
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Entry
RGE_24120 CDS
T01803
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03030
DNA replication
rge03410
Base excision repair
rge03420
Nucleotide excision repair
rge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE_24120 (ligA)
03410 Base excision repair
RGE_24120 (ligA)
03420 Nucleotide excision repair
RGE_24120 (ligA)
03430 Mismatch repair
RGE_24120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rge03032
]
RGE_24120 (ligA)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_24120 (ligA)
Enzymes [BR:
rge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGE_24120 (ligA)
DNA replication proteins [BR:
rge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGE_24120 (ligA)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGE_24120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE_24120 (ligA)
MMR (mismatch excision repair)
DNA ligase
RGE_24120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGE_24120 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAL95753
UniProt:
I0HRW6
LinkDB
All DBs
Position
2541706..2543790
Genome browser
AA seq
694 aa
AA seq
DB search
MPETTPAARAEALRRLLAHHAHRYYVLDAPEIPDAEYDRLFQELQAIEADHPELLTPDSP
TQRIIGQVLPGLVPVRHVVPMLSIRTETDTTAAGAAAFDARVRRELELGEDAPPVEYAAE
LKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGEAPPVLEVRGEV
YMRRDDFERLNERQREKGARTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQGWQ
QPATHSATLDALAAFGLPVNGERAVVQGADGLVAFHQRIAAARDRLPFDIDGVVYKVNDI
ALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGTTVS
NATLHNLFELRRKGVRVGDTVVVRRAGDVIPEVVGRVPGERAGYVPNFRMPRQCPVCGSA
VARERGGIDHRCSGGLFCAAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDAGIIRTLPEL
YTLGVLKLSALDRMADKSAANLVAALEKSKQTTLARFLYALGIRQVGEATAKDLARHFGS
LDRVMDASVEQLLEVRDVGPIVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAALANV
AALPLAGKTLVLTGTLPTLSREQAKEIIEAAGGKVAGSVSKKTHYVVAGEEAGSKLEKAR
ELGITVLDEDGLKALIEAAAAAANDEAAAAAGES
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagacgacccccgccgcgcgtgcggaggcgctgcgccgcctgctcgcccaccac
gcccaccgctactacgtgctcgacgcgccggagatccccgacgccgagtacgaccgcctg
ttccaggagctgcaggcgatcgaggccgaccaccccgagctgctgacgcccgactcgccg
acgcagcgcatcatcggccaggtgctgcccgggctggtgccggtgcgccacgtcgttccg
atgctgtcgatccgcaccgagaccgacaccaccgccgccggtgccgcggccttcgacgcg
cgtgtgcgccgcgagctggaactgggcgaggacgcgccgccggtcgagtacgctgccgag
ctgaagttcgacggcctggcgatcaacctgcgctacgtagccggcctgctggtgcaggcc
gccacccgcggcgacggcgagaccggcgaggacgtcacgcacaacatccgcacgatcggc
cagatcccgctgcgcctgttcggcgaggcgccgccggtgctggaggtccgcggcgaggtc
tacatgcggcgcgacgacttcgagcgcctgaatgaacgccagcgcgagaagggcgccagg
accttcatcaacccgcgcaacaccgccgccggcgcggtgcgccagctcgacagccgctcg
ctcgccgacaagcgcctgagcttctacgcctacggcctgggcgaagtgcagggctggcag
cagccggcgacgcacagcgcgacgctggacgcgctcgccgccttcggcctgccggtcaac
ggcgaacgcgcggtggttcagggcgccgacggcctcgtcgccttccaccagcgcatcgcc
gcggcgcgcgaccggctgccgttcgacatcgacggcgtcgtctacaaggtcaacgacatc
gcgctgcagaagcgcctgggtttcgtcacccgcgagccgcgctgggcggtggcgcacaag
tacccggcgcaggagcagatgacgcggctcaacgccatcgagatccaggtcggccgcacc
ggcaagctgacgccggtggccaagctggagccggtgttcgtcggcggcacgacggtcagc
aacgcgacgctgcacaacctcttcgagctgcgccgcaaaggcgtgcgcgtcggcgacacc
gtcgtcgtgcgccgcgccggcgacgtgattcccgaagtcgtcggccgcgtgcccggcgaa
cgcgccggctatgtgcccaacttccgcatgccgcgccagtgcccggtctgcggcagcgcc
gtcgcgcgcgagcgcggcggcatcgaccaccgctgcagcggcggcctgttctgcgccgcg
cagcgcaagcaggcgctgctgcacttcgccggccggcgcgcgatggacatcgagggcctg
ggcgacaagctcgtcgaccagctcgtcgacgccggcatcatccgcacgctgcccgagctg
tacacgctgggcgtgctcaagctctcggcgctggaccgcatggccgacaagagcgccgcc
aacctcgtcgccgcgctcgagaagagcaagcagacgacgctggcgcgtttcctctacgcg
ctgggcatccgccaggtcggcgaagccaccgccaaggacctggcgcgccacttcggcagc
ctggaccgcgtgatggacgccagcgtcgagcagctgctggaggtgcgcgacgtcgggccc
atcgtcgcgcagagcatccgcaccttcttcgagcagccgcacaaccgcgaggtcgtcgag
cagctgcgggccgccggcatccgctgggacgagcacgaaggcgcggcgcttgccaacgtg
gcggcgctgccgctggccggcaagaccctggtgctgaccggcacgctgccgacgctgtcg
cgcgagcaggccaaggagatcatcgaggccgccggcggcaaggtcgccggctcggtgtcg
aagaagacgcactacgtcgtcgccggcgaggaagccggcagcaagctggagaaggcgcgt
gaactcggcatcaccgtgctcgacgaagacgggttgaaggcgctgatcgaggcggctgcg
gccgccgccaacgacgaggcggccgctgccgccggggagtcctga
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