Mediterraneibacter gnavus: RGna_02685
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Entry
RGna_02685 CDS
T06719
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn03030
DNA replication
rgn03410
Base excision repair
rgn03420
Nucleotide excision repair
rgn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGna_02685
03410 Base excision repair
RGna_02685
03420 Nucleotide excision repair
RGna_02685
03430 Mismatch repair
RGna_02685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgn03032
]
RGna_02685
03400 DNA repair and recombination proteins [BR:
rgn03400
]
RGna_02685
Enzymes [BR:
rgn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGna_02685
DNA replication proteins [BR:
rgn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGna_02685
DNA repair and recombination proteins [BR:
rgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGna_02685
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGna_02685
MMR (mismatch excision repair)
DNA ligase
RGna_02685
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGna_02685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Nlig-Ia
Lar_restr_allev
Zn_ribbon_TFIIB
Aurora-A_bind
DASH_Dad3
Zn_ribbon_DUF2089
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QHB22472
LinkDB
All DBs
Position
516041..517993
Genome browser
AA seq
650 aa
AA seq
DB search
MDKVKRIKELVEQLNEYRDAYYNEARSDVSDAEYDRLFDELSELENETGVVYTNSPTQSV
GYEVKSELEKVKHSHPMLSLDKTKSVDDLVKFAGDKDCILSLKMDGLTCLLTYENGELVQ
AETRGDGEIGELITHNAKVFENIPLSIDYKGHFEIEGEAIITYEDFDKINKSLPDDKKYK
NPRNLASGSVRQLDSKIAAQRHIKFIAWKVPTDIASSSFINRLQYALDIGFDTVPFLPIR
GNCNAEFINIVVEQLRKRAKEKSFPIDGLVATYNDITYGESLGMTGHHPKHSIAFKFAED
SEETVLREIEWSIGKTGTLTPVAIFDSVDLAGTSVSRASLHNISIMKELNISIGSTVTVV
KKNEIIPQIISCDANAMDADIPTTCPVCGGETRIVKENDSEVLMCVNPHCKGKLLGRVSH
FVSKKGMDISGLSEETIKKLIELGWITEITDIYNLDQYYDRLSTMSGFGKKSVDKLRTSI
ENSKTVRLDKFIASLSVPGIGTSQSKELVKAFGTWDKFRDASVGYYDFTQLDGFGDVLNN
NIHSWFEDMSNIADYLASLMTFESEDNSKTNNSLNGKSFVVTGKVYKFKNRDEVKEAIEK
FGGKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEMLGM
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggataaggtcaaaagaattaaagagcttgtagagcagctaaacgaatatagagatgct
tactataatgaagcaagatctgatgtttctgatgcagaatacgatagattattcgatgaa
ttatcggagcttgaaaatgaaactggtgttgtgtatacgaattcgccaacacagtccgtt
gggtatgaggtgaaatctgaactagaaaaggttaaacattcccatccaatgctatcactg
gataaaacaaaatctgtagatgatttagtaaaatttgctggagataaagactgtatttta
agtctgaaaatggatggattgacatgtcttcttacatatgaaaatggagagttggttcag
gcagaaactcgtggtgacggtgagatcggcgaattgattacacataatgcaaaagtgttt
gaaaatattccgttatcgattgattataaaggtcattttgaaatcgaaggagaggcgatt
attacatatgaagactttgacaaaatcaataagtcattgccagacgataaaaaatataag
aatccgagaaatttagcttctggatctgtacgacaattagacagtaaaattgcagcacaa
cgccatattaaatttatcgcgtggaaagtgccaacagatattgcgtcaagtagttttatc
aatagattgcagtatgctttagatataggatttgacactgttccatttttacctattcgt
ggaaattgcaatgctgaatttattaatattgtggtagaacaattacgaaaacgtgcaaag
gaaaagagcttcccgattgatggcttagtggcaacgtacaatgatattacatacggagag
tcacttggaatgacaggtcatcatcctaaacattctattgcatttaaattcgcagaggat
tcagaagaaactgtattgagagaaattgaatggagtattggcaagacaggaactcttaca
ccagtagcaatttttgattcagttgatttggcaggaacatcagtgagtagagcttcattg
cacaacattagtattatgaaagaattgaatatttctatcggatcaacagtaacagttgta
aagaagaatgaaattattccacagattatttcctgcgatgcaaatgctatggatgcagat
attcctacaacatgtcctgtatgtggcggagagactcggattgtaaaagaaaacgattca
gaagttttaatgtgtgttaatcctcattgtaaaggcaagctactaggaagagtttctcat
tttgtttccaagaaaggtatggatatctcaggtttgtcagaagaaacaattaagaaactc
attgaacttggatggattacagagattacagacatctacaatcttgaccagtattatgat
aggttatctacaatgtctggatttggaaagaaatcagtagacaagttaagaacatcaatt
gaaaatagtaaaaccgtaagattggataaatttattgcatcattaagtgttcctgggatt
ggaacatcacagtcaaaagagttggttaaagcttttggtacatgggacaagtttagagat
gcaagcgttggttattatgactttacgcagcttgacggttttggagatgtattaaataac
aatattcattcttggtttgaagatatgagtaatattgcagattatcttgcttctcttatg
acgtttgaatcagaagacaattctaaaacaaacaattctttgaatggcaaatcatttgtt
gttaccggaaaagtatataaattcaaaaatcgtgatgaagtaaaagaagctattgaaaaa
ttcggtgggaaagtaacaggttctgtaacaaaatccacatttgctttaatcaataacgat
atagaatccaatagcagtaaaaataaaaaagcaaaagaacttggtgttcagattattaac
gaagaacagttaattgagatgttgggcatgtag
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