Rhizobium grahamii: FZ934_09200
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Entry
FZ934_09200 CDS
T06285
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03030
DNA replication
rgr03410
Base excision repair
rgr03420
Nucleotide excision repair
rgr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FZ934_09200 (ligA)
03410 Base excision repair
FZ934_09200 (ligA)
03420 Nucleotide excision repair
FZ934_09200 (ligA)
03430 Mismatch repair
FZ934_09200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgr03032
]
FZ934_09200 (ligA)
03400 DNA repair and recombination proteins [BR:
rgr03400
]
FZ934_09200 (ligA)
Enzymes [BR:
rgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FZ934_09200 (ligA)
DNA replication proteins [BR:
rgr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FZ934_09200 (ligA)
DNA repair and recombination proteins [BR:
rgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FZ934_09200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FZ934_09200 (ligA)
MMR (mismatch excision repair)
DNA ligase
FZ934_09200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FZ934_09200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
RNA_ligase
Lar_restr_allev
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QFY60587
UniProt:
A0A5Q0C9I2
LinkDB
All DBs
Position
complement(1860420..1862591)
Genome browser
AA seq
723 aa
AA seq
DB search
MSNEAIAVDALTIEDAAAELARLAKEIARNDELYHGEDRPAISDAEYDGLKRRNDAIEAR
FPELIREDSPSRRVGAAPSETFAPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGKMVSAATRGDGTTGENVTANIRTIKEIPQTLPAGVPDV
VEVRGEVFMAKSDFMGLNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAW
GEISEPNDLPKTQFDMVQTFKEWGFPVNPLMKRLNSVTDILAHYDEIGLKRPDLDYDIDG
VVYKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTTVENIDIQVGRTGALTPVARLTPI
TVGGVVVTNATLHNADYIEGIGNTGERIREEGHDIRIGDTVIVQRAGDVIPQVLDVVMEK
RPADAVRYDFPQKCPVCGSHAVREKNEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNA
FDIEGLGSKQVDFFFESEDPALQIRTAPDIFTLEKRQANSLTKLENIEGFGRVSVGKLYA
AINERRSIALHRFIYALGIRHIGETTAKLLARSYGTYADFGAAMEAAAPLSGDAWNDLNA
IEGIGEIVARAIVEFYKEPRNVEVISRLLAELNDGTPLPAEQIAASNSPVAGKTVVFTGS
LEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLDKARELGIQTMDEDEWLAL
ISG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgaagccatagccgttgatgccctgacgatcgaagatgctgccgccgagctt
gcgcggctcgccaaggagatcgcccgcaacgatgagctttatcacggcgaggatcgtccg
gcgatttcggatgctgaatacgatgggctgaaacgacgaaacgacgcgatcgaagcgcgg
tttccggagctcattcgcgaggacagcccgtcgcggcgcgtcggtgcggcgccttcggaa
accttcgcgcccgtcgtgcacgcgcggccgatgctatcgctcgacaatacgttttcgcag
gaggatgtgcaggacttcgtggcaagcgtctatcgcttccttggtcgtctgccggatcaa
tccatcgcctttacggccgagccgaagatcgatggcctctccatgtcgatccgctacgag
aacgggaagatggtgagtgccgctacgcgaggcgacggcacgacgggcgagaatgtcacg
gccaacatccgtacgatcaaggaaatcccgcagacgctgcctgccggcgtgcctgatgtc
gttgaggtgcgcggcgaagtctttatggccaagagcgacttcatgggcctgaacaggcag
atggaagcggaaggcaagcagacctacgtcaacccgcgcaacacggcggccggatcgctc
cgccagctcgacgccaaggtgacagccagccgcaagctgagattcttcgcctatgcctgg
ggcgagatttcggagccgaatgatctgccgaagacccagttcgacatggtgcagaccttc
aaggaatggggtttcccggtcaatccgctgatgaagcggctgaattcggttaccgatatc
ctggctcactacgatgagatcggcctgaagcggccggatctcgactatgacatcgacggt
gtcgtctacaaggtcgatagcctggagctccagcaaaggctcggcttccgctcgcgcagc
ccacgctgggcgacggcgcacaagttcccggcggagcaggctttcaccaccgtcgagaat
atcgatatccaggtgggacgcaccggcgcgctgacgccggttgcgcggctgacgccaatt
accgtcggcggtgtcgtcgtgaccaatgcgacgctgcataacgccgactacatcgaaggt
atcggcaatacgggcgagcgcattcgggaagagggtcacgatatccggatcggcgacacg
gttatcgtgcagcgggcgggggatgtgattccgcaggtgctcgacgttgtcatggagaag
cgaccggcagatgcagtccgctatgatttcccgcagaaatgcccggtctgcggcagccat
gcggttcgggaaaaaaacgagaaaaccggcaagctcgattcggtcacgcgctgcaccggc
ggtttcatctgccgcgcgcaggccaccgagcacctgaagcacttcgtctcgcgcaatgcc
ttcgatatcgagggcctcggatcgaagcaggtcgacttcttcttcgagagtgaggatccg
gcgctgcagatccgcaccgcgcctgacattttcacgttggagaaacggcaggcgaactcg
cttacgaagctcgaaaacatcgagggcttcggtcgggtgagcgtcggcaagctttatgct
gcgatcaacgaacggcgcagcatcgcgctgcaccggttcatctacgcgctcggcatccgc
cacatcggcgagacgacggcgaagctgctggcacgatcctacggcacctatgcagacttc
ggcgcagcgatggaagctgctgcgccactgtcaggcgatgcttggaatgatctcaatgcc
atcgaaggcataggcgagatcgtcgcccgcgcgatcgtggaattctacaaggagccgcgc
aacgtcgaggtgatctcgcgcctgctggccgagctgaacgacgggacgccattgccggcg
gaacagatcgcggcttcgaacagcccggtcgccggcaagacggttgtgtttaccggttcg
ctcgagaagttcacgcgcgatgaggccaaggcgcgagccgaaagcctcggcgccaaggtc
gcgggctcagtgtcgaagaagaccgacatccttgtggcggggcctggcgctggttccaag
ctcgacaaggcgcgcgaactcggaatccagaccatggacgaggatgagtggctggcgctg
atcagcgggtga
DBGET
integrated database retrieval system
