Piscinibacter gummiphilus: A4W93_13580
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Entry
A4W93_13580 CDS
T04831
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rgu
Piscinibacter gummiphilus
Pathway
rgu03030
DNA replication
rgu03410
Base excision repair
rgu03420
Nucleotide excision repair
rgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4W93_13580 (ligA)
03410 Base excision repair
A4W93_13580 (ligA)
03420 Nucleotide excision repair
A4W93_13580 (ligA)
03430 Mismatch repair
A4W93_13580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgu03032
]
A4W93_13580 (ligA)
03400 DNA repair and recombination proteins [BR:
rgu03400
]
A4W93_13580 (ligA)
Enzymes [BR:
rgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4W93_13580 (ligA)
DNA replication proteins [BR:
rgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4W93_13580 (ligA)
DNA repair and recombination proteins [BR:
rgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4W93_13580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4W93_13580 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4W93_13580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4W93_13580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ARN20845
UniProt:
A0A1W6L963
LinkDB
All DBs
Position
3048229..3050310
Genome browser
AA seq
693 aa
AA seq
DB search
MSTRTPSDAAARAADLRDQLREHAHRYYVLDEPSIPDAEYDRLFQALQAIEAEHPELLTP
DSPTQRVIGQVLDGFTPVRHTVPMLSIRTETDTEATGALAFDARVRKELGLAPDAPPVEY
AAELKFDGLAINLRYEQGVLVQAATRGDGEKGEDVTQNIRTIAQIPLRLKGSVAPVIEVR
GEVYMRRDDFDALNERQRELIAHGAKNEKTFVNPRNAAAGAVRQLDPAIARKRPLSFFAY
GLGDVQGWDIPPTHSGLLDALQAFGLPVDRQREVVAGAEGLVAFHKRIGEARDALPFDID
GVVYKVNDRVLQQKLGFVSREPRWAVAHKYPAQEQMTILRDIDIQVGRTGKLTPVAKLEP
VFVGGTTVSNATLHNEDETRRKDVRVGDTVIVRRAGDVIPEVVGVVLDRRPADVGEPFDL
YKKLEGKCPVCGSGIARDEGEANWRCSGGLFCAAQRKHAILHFASRRAMDVEGLGDKLVE
QLVDGGLIRTLPELYKLGIAKLTALERMGDKSALNLLDGLERSKQTTLARFLFALGIRNV
GETTAKDLARHFGQLDRLLDATVEQLLEVPDVGPIVAESIRTFFDQPHNREVVEQLRAAG
ITWEESDGTADLSPKPFAGKTFVLTGTLPEWSRDEAQAAIEAAGGKVSGSVSKKTHFVVA
GEEAGSKLQKALDNGVPVIDEAGLREMLKAGGR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgagaaccccttccgacgccgcggcccgcgccgccgacctccgcgaccagctc
cgcgagcacgcgcaccgttactacgtgctcgacgagccgagcattcccgacgccgagtac
gaccggctgttccaggcgctgcaggcgatcgaggccgaacaccccgagctgctgacaccc
gactcgcccacgcagcgggtgatcggccaggtgctcgacggcttcacgccggtgcgtcac
acggtgcccatgctcagcatccgcaccgagaccgacaccgaggccaccggcgcgctggcg
ttcgacgcccgcgtgcgcaaggaactgggcctggcgcccgacgcaccgccggtcgaatac
gcggccgaactgaagttcgacggcctggccatcaacctgcgctacgaacagggcgtgctg
gtccaggccgccacgcgcggcgatggcgagaagggcgaggacgtcacccagaacatccgc
accatcgcgcagatcccgctgcgcctgaagggctccgtggcgccggtgatcgaggtgcgc
ggcgaggtctacatgcgccgcgacgacttcgatgcgctcaacgaacgccagcgcgagctg
atcgcgcacggcgcgaagaacgagaagaccttcgtcaacccgcgcaacgccgccgccggc
gcggtgcgccagctcgaccccgccatcgcgcgcaagcggccgctgagcttcttcgcgtac
ggcctgggcgacgtgcagggctgggacatcccgcccacgcacagcgggctgctcgacgcg
ctgcaggccttcggcctgccggtcgaccggcagcgcgaggtggtggccggcgccgagggc
ctggtggccttccacaagcgcatcggcgaggcccgcgatgcgctgccgttcgacatcgac
ggcgtggtctacaaggtcaacgaccgggtgctgcagcagaagctcgggttcgtctcgcgc
gagccgcgctgggccgtggcccacaagtacccggcgcaggaacagatgacgattctgcgc
gacatcgacatccaggtgggccgcaccggcaagctcacgccggtcgccaagctcgagccg
gtgttcgtgggcggcaccacggtcagcaacgccacgctgcacaacgaggacgagacgcgg
cgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcggcgcgcgggcgacgtgattccc
gaggtggtgggcgtggtgctcgaccgccggccggccgacgtgggcgagccgttcgacctc
tacaagaagctcgaaggcaaatgccccgtgtgcggcagtggcatcgcgcgcgacgaaggc
gaggccaactggcgctgcagtggcgggctgttctgcgcggcccagcgcaagcacgccatc
ctgcacttcgcgagccgccgggccatggacgtggaaggtctcggcgacaagctcgtcgag
cagctggtggacggcggcctcatccgcacgctgcccgagctctacaagctcggcatcgcg
aagctcacggcgctcgagcgcatgggcgacaagagcgcgctgaacctgctcgacgggctc
gagcgcagcaagcagaccacgctcgcgcgtttcctcttcgcgctcggcatccgcaacgtg
ggcgagaccaccgcgaaggacctggcccgccacttcggccagctcgaccgcctgctcgac
gccaccgtggagcagctgctggaggtgcccgacgtgggccccatcgtggccgagagcatc
cgcacgttcttcgaccagccgcacaaccgcgaggtggtcgagcagctgcgcgccgcgggc
atcacgtgggaggagagcgacggcaccgccgacctctcgccgaaacccttcgccggcaag
accttcgtgctcaccggcacactgcccgagtggtcccgcgacgaggcccaggcggccatc
gaggctgcgggtggcaaggtgagcgggtcggtctcgaagaagacccacttcgtcgtggcc
ggcgaggaggccggcagcaagctgcagaaagccctcgacaacggcgtgccggtgatcgac
gaggccggcctgcgcgagatgctgaaggccggtggccgctga
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