Candidatus Rhabdochlamydia oedothoracis: RHABOEDO_000678
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Entry
RHABOEDO_000678 CDS
T07398
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhaw
Candidatus Rhabdochlamydia oedothoracis
Pathway
rhaw03030
DNA replication
rhaw03410
Base excision repair
rhaw03420
Nucleotide excision repair
rhaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHABOEDO_000678
03410 Base excision repair
RHABOEDO_000678
03420 Nucleotide excision repair
RHABOEDO_000678
03430 Mismatch repair
RHABOEDO_000678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhaw03032
]
RHABOEDO_000678
03400 DNA repair and recombination proteins [BR:
rhaw03400
]
RHABOEDO_000678
Enzymes [BR:
rhaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHABOEDO_000678
DNA replication proteins [BR:
rhaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHABOEDO_000678
DNA repair and recombination proteins [BR:
rhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHABOEDO_000678
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHABOEDO_000678
MMR (mismatch excision repair)
DNA ligase
RHABOEDO_000678
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHABOEDO_000678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
Zn_ribbon_NUD
HHH
BRCT_2
PTCB-BRCT
UPF0758_N
Clathrin
Nlig-Ia
HHH_3
5_3_exonuc
zf-C3HC4_IRF-2BP1_2
Motif
Other DBs
NCBI-ProteinID:
QYF48503
UniProt:
A0ABX8V646
LinkDB
All DBs
Position
692596..694605
Genome browser
AA seq
669 aa
AA seq
DB search
MSAKQVSFTHKQYTQYIEEIHKHDRLYFLEAKPVISDYEYDQLVKKVEEMEKMHPEWIDP
SSPTQRLTDQPSKGFIQVKHTTPMLSLSNTYSQEEVEDFIKRMQKWLGPQNLQFCTELKM
DGVAITVCYQDGKLLQALTRGDGKVGDDITANIKAIRSIPLCIKTKKRIEVRGEVFMLHR
VFQKLNQSKVAVGDELWANPRNAAAGSLKLLDANQVAKRSLSAVFYAFANEAEAPCTTQY
DCHHYLKSLGLPSFSDAYIKRCHTADEIMEFAKQIEKKRHHLAFDIDGIVVKIDLLKDHA
ELGVTGKSPRWAIAYKFAPEQAETKIRDITVQVGRTGVLTPVAELEPVLLAGSTIARATL
HNREEIERKDIRIKDYVIIEKGGDVIPKVLQVNLKKRIKSSTPWDMPHFCPSCGSKVVQY
EGEVAMRCPNTKNCPEQVMRKIFFFASKDAMNIEHLGDKVTKQLIAKKLIRSVADLYQLT
KEDLAQLEGFKEKSIQNLLNSIDKSRHVSLDRFILALGIKYVGEGSAELLAQAARTIDRL
LEMHMDELRKIQGIGEKTAIAVVEYFKDPNYLQEIKALLEAGVKPQSMQTIQIENHYFAN
KIFVLTGTLKEYSRIDAALLIKERGGRVTNSVSRNTDYLLIGEDPGSKLAKAQEYKVHIL
NEQAFKKLL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgctaaacaagtttcttttacacataaacagtacacgcaatacatagaagagatc
cataaacacgatcggctctattttctcgaagccaaacccgttatctcagattatgaatat
gatcagttggtaaaaaaagtagaagaaatggagaaaatgcatccagagtggattgatccc
tcctctcctactcagcgtttaacagaccaaccttctaagggatttattcaagtaaaacat
acaactcctatgctttccctaagcaatacctattcccaagaagaggtggaagattttatt
aaacgcatgcaaaaatggctaggtcctcaaaacttgcagttttgtacagagctaaaaatg
gatggggtagctataaccgtctgttatcaagatggcaaattgctacaggctctcactcga
ggggatggaaaagtaggtgatgatattaccgcaaatattaaagctattcgctctattcct
ctttgtataaaaacaaaaaagagaatagaggttagaggagaagtatttatgttgcatcgg
gtttttcaaaagctcaatcaatccaaggtagctgtaggagatgagttatgggcaaatcca
agaaatgcagcagcggggtctttaaagctacttgatgcaaatcaagtagctaaacgttct
ttaagcgctgtgttttatgcttttgctaatgaagcagaggctccttgcacaactcaatat
gattgccatcactatttaaaatctttaggccttcctagcttttccgatgcatatatcaag
cgttgtcacacagcagatgagatcatggagtttgcaaaacaaattgagaaaaaaaggcat
catcttgcgtttgatattgatgggattgtagttaaaatagatctactaaaagatcacgca
gagcttggtgttacaggtaaaagccctagatgggcgattgcttataaatttgctcctgag
caagccgaaacaaaaattagagatattaccgtgcaagtaggcagaacaggagtattaacc
ccagtagctgaattagaacctgtattgttagctggtagcacaattgctcgggctacttta
cataatcgagaagaaatagagagaaaagacattcgtattaaagattatgtaatcattgaa
aaaggaggcgatgtcattcctaaagtgctgcaggttaacttaaagaaacgcataaaatcc
tcaactccctgggatatgccacatttttgtcccagttgtggtagcaaagtggtgcaatat
gaaggcgaggttgctatgcgctgtcctaatactaaaaattgtcctgagcaagttatgcgt
aaaatcttcttttttgcaagtaaagatgctatgaacatcgaacatttaggggacaaggtg
actaaacaactcatcgcaaaaaaattgattcgcagcgtagccgatctctatcaattgact
aaagaagatttagctcaattagaaggatttaaagaaaaatcgattcaaaacttgctaaat
agcattgataaatctcgccatgtaagtttggatcggtttatcttagctttgggaattaaa
tatgtaggagaaggctctgccgaattgcttgcacaagcagctaggacaatcgataggctt
ttagaaatgcacatggatgaactgcggaaaattcaaggaattggagaaaaaacggctatt
gctgttgttgagtattttaaagatccaaattatttacaggagataaaggctttactcgaa
gctggggtaaaacctcaatcgatgcaaacaattcagattgaaaatcactattttgccaat
aaaatatttgtgttaaccggtactttaaaagagtatagtagaatagatgctgctcttctt
attaaagaaagaggaggcagggtaacaaattctgtgagtcgtaataccgattatcttcta
ataggtgaagatccagggtctaaattggctaaagcacaagaatacaaagtccatatatta
aatgagcaagcttttaaaaagctgctatag
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