Rhodanobacter denitrificans: R2APBS1_2141 Help Entry R2APBS1_2141      CDS       T02495                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rhd  Rhodanobacter denitrificans Pathway rhd03030   DNA replication rhd03410   Base excision repair rhd03420   Nucleotide excision repair rhd03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rhd00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     R2APBS1_2141    03410 Base excision repair     R2APBS1_2141    03420 Nucleotide excision repair     R2APBS1_2141    03430 Mismatch repair     R2APBS1_2141  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rhd03032]     R2APBS1_2141    03400 DNA repair and recombination proteins [BR:rhd03400]     R2APBS1_2141 Enzymes [BR:rhd01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      R2APBS1_2141 DNA replication proteins [BR:rhd03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      R2APBS1_2141 DNA repair and recombination proteins [BR:rhd03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      R2APBS1_2141    NER (nucleotide excision repair)     GGR (global genome repair) factors      R2APBS1_2141    MMR (mismatch excision repair)     DNA ligase      R2APBS1_2141   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       R2APBS1_2141 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT Motif Other DBs NCBI-ProteinID:  AGG89258 UniProt:  M4NHV9 LinkDB All DBs Position complement(2294829..2297255) Genome browser AA seq 808 aa AA seqDB search MTERLAPAETVAHAAALRAQIEQANYRYHVLDDPEITDAEYDRLMRELEALEAEHPALAS PDSPTRKVGARAQGGFAEVRHAIPMLSLGNAFEQDGESDRERFREVAEFERRIEQTLKRR EPVFSVEPKLDGLAISLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLRLRNGKNQD ESLRLRSTGWPDVLEVRGEVIMLHKDFEAFNAYARKHGEKPLANPRNGAAGSLRQLDPAV TAKRRLSFFAYAIGAVEGGELPPTHSATLRQLREWGFPVSPEVDTARGFDGLIAYYRRIG AKRDSLPYDIDGVVYKLDDYAGQREMGFVSRAPRWAIAHKFPAQEQITTVEAIEIQIGRT GAATPVARLAPVQVAGVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMPEL RPPHTRPWHMPAHCPVCGSELLREEGAAAWRCSGGLICAAQRKEALIHFASRRAMDIEGL GERFAEALVELDIVHSPADLYGLGVDDFVEMKRRIDERDGTTPETVKAGKVATKWAENLV AGIEASKRTTLARFLFALGIMHIGESTAKTLAAWLGRLEFVRSTPAAVLRVLPDIGSEVA TSIAGFFAQAGNEQVVDALLEAGITFSDEGAPSPQLRARLDFGVLLGMANINKLGPKSCA LLAQHFSTLDQLLAGGSAHWITAGVPQTAATSLEHHLADPAALAALREAEAAMQRLLAAI PHTAKAATAPLEGQTFVLTGTLASLSRDEAKDRLEALGAKVSGSVSKKTSAVIAGEATGS KLDKAQELGVPVWDEAQLLALLGKHEAG NT seq 2427 nt NT seq  +upstreamnt  +downstreamnt atgaccgaacgcctggccccggccgagactgtcgcccacgccgccgcgctgcgggcgcag atcgagcaggccaactaccgctaccacgtgctcgacgacccggagatcaccgacgccgag tacgaccggctgatgcgcgaactcgaggcactggaggccgagcatcccgcgctggcctcg cccgattcgccgacccgcaaggtcggcgcgcgcgcgcagggcggtttcgccgaggtccgc cacgcgatcccaatgctgtcgctgggcaatgcgttcgagcaggacggcgagtcggatcgc gaacgcttccgcgaagtggccgaattcgaacgccgcatcgagcagacgctgaagcggcgc gagccggtattttcggtcgagcccaagctcgacggcctggcgatcagcctgcgctacgag cacggcgtgttcgtgcagggcgccacccgcggcgacggcgagaccggcgaggacgtgacc gcgaacctgcgcacggtgcgggcgatcccattgcgcttgcgcaatgggaaaaatcaggat gaatcgctgcgcctgcgcagcacgggctggcccgacgtgctggaagtgcgcggcgaagtg atcatgctgcacaaggatttcgaggcgttcaacgcatacgcccgcaagcatggcgagaag ccgctggcgaacccgcgcaacggcgcagccggttcgctgcgccagctcgacccggcggtc accgcgaagcggcggctgagtttcttcgcctatgcgatcggtgcggtcgagggcggcgag ctgccgccgacccattcggccacgctgcggcagctgcgcgagtggggctttccggtgtcg ccggaggtggacacggcgcgcggcttcgacggcctgatcgcctactaccgccgcatcggt gccaagcgcgacagcctgccgtacgacatcgacggcgtggtctacaagctggacgactac gccggccagcgcgagatgggcttcgtctcccgtgcgccgcgctgggcgatcgcgcacaag ttcccggcgcaggagcagatcaccacggtcgaggcgatcgagatccagatcggccgcacc ggcgcggccacgccggtggcacggctggcgccggtgcaggtggccggcgtcaccgtcacc aacgccacgctgcacaacgccgaccaggtcgcgcggctggatgtgcgcgtgggcgacacg gtgatcgtgcgtcgcgccggcgacgtgatcccggaagtggtgcgcgtgatgcccgaactg cggccgccgcatacgcgcccctggcacatgcctgcgcactgcccggtatgcggctccgaa ctgctgcgcgaggagggcgccgcggcgtggcgctgctccggcgggctgatctgtgcggcg cagcgcaaggaggcgctgatccacttcgcctcgcgccgcgcgatggatatcgaaggcctg ggcgagcgcttcgccgaggcgctggtggaactggacatcgtgcattcgccagccgacctg tacggcctgggcgtggacgatttcgtcgagatgaagcggcgcatcgacgagcgtgacggc accacgccggagactgtcaaggccggcaaggtggcgaccaagtgggcggaaaacctggtg gccgggatcgaggccagcaagcgcaccacgctggcgcgcttcctgtttgcgctgggcatc atgcacatcggcgaaagcacggcgaagacgctggccgcgtggctgggccggctggagttc gtgcgcagcacgccggcggcggtgctgcgcgtgctgccggacatcggcagcgaagtggcc acctcgatcgccggtttcttcgcgcaggcgggcaacgagcaggtggtcgacgcgctgctc gaagccggcatcacgttcagcgacgagggtgcgccgtcgccgcagctgcgtgcgcggctg gacttcggcgtattgctgggcatggccaacatcaacaagctcggccccaagagctgcgcg ctgctggcgcaacacttctccacgctcgaccagttgctggccggcggatcggcgcactgg atcactgccggcgtgccgcagacggcggcgaccagcctggaacatcatctggccgacccg gccgcgctggccgcgctgcgcgaggccgaggcggcgatgcagcgcctgcttgccgccatc ccgcacacggcgaaagcggcgacggcgccgctggaagggcagaccttcgtgctcaccggc acgctggcctcgctcagtcgcgacgaagcgaaggaccggctcgaagcgctgggcgccaag gtgtccggctcggtgtcgaagaagaccagcgcggtgatcgccggcgaagccaccggctcc aagctggacaaggcgcaggagctgggcgtgccggtgtgggacgaggcgcagctgctggcg ctgctgggcaagcacgaggccggctga

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