Rhodococcus sp. DK17: PST05_33010
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Entry
PST05_33010 CDS
T11476
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhdk Rhodococcus sp. DK17
Pathway
rhdk03030
DNA replication
rhdk03410
Base excision repair
rhdk03420
Nucleotide excision repair
rhdk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PST05_33010 (ligA)
03410 Base excision repair
PST05_33010 (ligA)
03420 Nucleotide excision repair
PST05_33010 (ligA)
03430 Mismatch repair
PST05_33010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhdk03032
]
PST05_33010 (ligA)
03400 DNA repair and recombination proteins [BR:
rhdk03400
]
PST05_33010 (ligA)
Enzymes [BR:
rhdk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PST05_33010 (ligA)
DNA replication proteins [BR:
rhdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PST05_33010 (ligA)
DNA repair and recombination proteins [BR:
rhdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PST05_33010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PST05_33010 (ligA)
MMR (mismatch excision repair)
DNA ligase
PST05_33010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PST05_33010 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
DUF8259
Motif
Other DBs
NCBI-ProteinID:
WZV38131
LinkDB
All DBs
Position
7106843..7108933
Genome browser
AA seq
696 aa
AA seq
DB search
MSESTEAPTPAPGHVREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQY
PDLRTPDSPTQLVGGGFSTDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHYL
CEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPIPALL
EVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLG
RSEGFEPVSQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVV
KVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPTHCP
ECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKAI
GDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLARIRESSVEELAAVDGVGGTIAAAVAEWFGVDWHQQIVEKWSAAGVR
MEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAFVVVGESP
GSKHDKAVELGVPVLNEDGFRRLLEGGPDAVADSGV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgaccgaagccccgacaccggcccccggacacgtccgggagcattggaac
gagctggccgaggaagtgcggcagcaccagttccgctattacgtccgcgacgcgcccatc
atctccgacggcgagttcgacgtgctgctgggcgagctgaacgacctcgaaaaccagtac
cccgacctgaggacgcccgattcgccgacacaactcgtcggcggcgggttctccaccgac
ttcgcctccgccgatcatctcgagcggatgctcagcctcgacaacgtcttcgccaccgac
gaactgcgcacctggatcagccgggtggagcaggagaccgggcccgacctgcactacctg
tgcgaggtgaagatcgacggggtcgcgctgaacctggtctacgagaacggccggctcgtc
cgggccgccacgcgcggcgacggccggaccggtgaagaagtgacgctcaatgcgcggacc
atcgacgacattccggaaaagctcaccggcacagacgaataccccatcccggcactcctc
gaggtgcgcggcgaggtgttcttccggctcgaggacttcgccgcactcaatgcggcgctc
gtagaggaaggcaaggcgccgttcgcgaatccccgaaattccgcggccgggtcgctgcgg
cagaagaatccggccgtcacggcccgcaggcgcctcgggatgatctgccacggcctcggc
cggagcgaaggattcgagccggtctcccagtacgacgcgtacacggctctggcggcgtgg
ggcctgccggtgtcgacccacaccgcccgcgtcacgggcgcggacgccgtcgtggacagg
gtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggtctggtggtc
aaggtagacgagacgtcgctgcaacgccggctggggtccacgtcgcgggcgccgcgctgg
gcgatcgcctacaagtacccgccggaagaggccaccaccaagctcctcgacatccgggtc
aacgtcggtcgcaccggccgggtcaccccgttcgcctacatggaaccggtcacggtcgcc
ggctccacggtctccctcgccaccctgcacaacggctccgaggtcaaacgcaagggcgtg
ctcatcggcgacacggtcgtgctgcgcaaggccggcgacgtcatccccgaggtcctcgga
cccgtggtcgacgcccggacgggcgacgagtacgagttcgtgatgcccacccactgcccg
gagtgcgacacaccgctggcccccgccaaagagggggacgcggacattcgctgccccaac
cagcagtactgccccgcgcaactccgggaacgcgtgttccacgtggcgggccgcggcgca
ttcgacatcgaggtcctcggttacgaggccgccacgagcctgctcgaagccaaggcgatc
ggcgacgagggcgacctgttctcgctcaccgaggacgatctgctcaagacgtcgctcttc
cggaccaaggccggcggcctgtcggccaacggccgcaggctgctcgacaacctcgattcc
gccaaggacaagccgctgtggcgggtgctggtcgcgctgtccatccgccatgtcggtccc
acggcggcgcgtgcgctggccggtgaattcgggtcgctcgcgcggatccgggagagctcc
gtcgaggaactcgcggcggtggacggggtcggcggcaccatcgccgcggctgtcgccgag
tggttcggcgtcgactggcaccagcagatcgtggagaagtggtccgcggccggggttcgc
atggaagacgaacgcgacgaatcgattccgcgcaacctcgagggactgtcgatcgtcgtg
acggggtcgctggagacgttctcgcgcgaccaggcgaaggaggcgatcctcgtccggggc
ggtaaggccgcgggttcggtgtcgaagaagacggcattcgtggtggtcggcgaatcgccg
ggctcgaagcacgacaaggccgtcgaactcggagtgccggtcctcaacgaggacgggttc
cgccgactgctggagggcggaccggacgcggtcgcggactccggagtgtga
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