Rheinheimera sp. F8: ATY27_00440
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Entry
ATY27_00440 CDS
T09854
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhei
Rheinheimera sp. F8
Pathway
rhei03030
DNA replication
rhei03410
Base excision repair
rhei03420
Nucleotide excision repair
rhei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATY27_00440 (ligA)
03410 Base excision repair
ATY27_00440 (ligA)
03420 Nucleotide excision repair
ATY27_00440 (ligA)
03430 Mismatch repair
ATY27_00440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhei03032
]
ATY27_00440 (ligA)
03400 DNA repair and recombination proteins [BR:
rhei03400
]
ATY27_00440 (ligA)
Enzymes [BR:
rhei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATY27_00440 (ligA)
DNA replication proteins [BR:
rhei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATY27_00440 (ligA)
DNA repair and recombination proteins [BR:
rhei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATY27_00440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATY27_00440 (ligA)
MMR (mismatch excision repair)
DNA ligase
ATY27_00440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATY27_00440 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ALZ74381
LinkDB
All DBs
Position
complement(93656..95686)
Genome browser
AA seq
676 aa
AA seq
DB search
MSDLQTRIDALRHTLNQHSYQYYVLDNPSIPDADYDALYRELQALEQQHPALITADSPTQ
RVGAAPLDKFGQVSHQIAMLSLDNAFEAADFQAFYQRMADRLDQQIEFSFCAEPKLDGLA
VSIRYEDGLLVQAATRGDGYTGEDITGNIKTIRAIPLKLQGDYPPVLEVRGEVFMPLAGF
EKMNDKARLAGDKVFANPRNAAAGSLRQLDPRITASRPLSFYAYAVGAVTDPATLLNGNS
HYARLQQLKSWGLPVCPEIRLVKGAAAALAYHADILQRRAALAYEIDGVVLKVDDLLQQQ
NLGFVSRAPRWAIAFKFPAQEKTTRLLDVEFQVGRTGSVTPVARLEPVSVGGVTVSNATL
HNQDEINRLGIKIGDSVIIRRAGDVIPQVVAVVLAERPQDARDIVFPTECPVCGSTTERV
EGEAVTRCTGGLFCGAQRKEALKHFVARKAMDIEGLGDKLIEQLVDEQLVQSPVDIYRLD
MPALVGLERMGEKSAMKLLAAIEHSKQSTLPRFIYALGIREVGEATALNLAQHFRSLDTL
RAASLEQLLEVADVGSVVAGQILHFLAEPHNQAVIDGLIAVGVQWPDIAEKAQTAQPLAG
QTLVLTGTLIAMGRDEAKEKLQQLGAKVAGSVSAKTSAVIAGDNAGSKLAKAEELGVAVW
TEQQMLDLFAEHGLAG
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctgcaaacccgcattgatgcgctgcgtcacacgctgaaccagcatagttat
caatattatgtactcgataatcccagcattccggatgcggattacgacgcgttgtatcgt
gagttgcaggcgctggaacaacagcatccggcactgatcacggcagattcgccgacgcag
cgcgttggggctgcgccattagataaatttggtcaggtcagccatcaaattgcgatgttg
tcgttggataatgcctttgaagccgctgattttcaggcgttttatcaacggatggccgac
cgccttgatcagcagattgaattcagtttttgtgctgaacccaaactcgatggtctggcc
gtcagtatccgttatgaagacgggttattggtgcaggcagccacccgcggagacggttat
accggcgaagacattaccggcaatatcaaaaccatccgggcaattccgctgaagttacag
ggcgactatccgccggtgctggaagtgcggggtgaagtctttatgccgctggctggtttt
gaaaaaatgaatgacaaagcccggctggccggtgacaaagtttttgccaatccgcgtaat
gcggccgctggcagtttacgccagctcgacccgcgcattaccgccagtcgcccgctgagt
ttttatgcctatgcggtgggggctgtgaccgatcctgcgacactgctcaacggcaatagc
cattatgcgaggcttcagcaattaaaaagctggggcttgccggtttgcccggagatccgg
ctggtaaagggggctgccgctgcacttgcgtaccatgctgatatcctgcaacgacgcgcc
gctcttgcctatgaaattgacggtgtggtgcttaaagtcgacgatttgctgcaacaacaa
aaccttggttttgtgtcgcgggcgccgcgttgggccattgcctttaaattcccggcgcag
gaaaaaaccacccgcttactcgatgttgagtttcaggttggtcgcaccggttcggtcacg
ccggtggcgcgactggagccggtcagtgttggtggtgtcaccgtatcgaatgccactttg
cacaatcaggatgagatcaaccggctcggcatcaaaattggcgacagcgtcattattcgc
cgcgccggggatgtgatcccacaggtcgtcgctgtggtgctggcggaacggccgcaggat
gcgcgcgacattgtgtttccgacagagtgcccggtctgtggcagcactacagaacgggtg
gaaggcgaagcagtgacgcgttgcaccggtggtttattttgcggtgcgcagcgtaaagaa
gcgctgaagcattttgttgcacgcaaagcgatggatattgaagggttaggcgacaagctg
atcgagcagttagtcgacgaacagctggtgcaaagcccggtggatatttaccgcttggat
atgcccgcgctggtcggactggagcggatgggcgaaaagtcggccatgaaattgctggca
gcgattgaacactcgaaacaaagcacactgccacgatttatttatgcgcttggcattcgc
gaagtcggcgaggcgacagcactgaatctggcgcagcattttcgtagtctggacactttg
cgtgcagcatcgctggagcagttactggaagtagcagatgtcgggtccgtcgttgccgga
cagatcctgcatttcctggccgagccacacaatcaggcggtgattgatggtttgattgcc
gttggcgtgcaatggccggatattgccgaaaaagcgcaaacggcgcagccgctggcaggg
cagacgctggtgctgaccggcactttaattgcgatgggccgtgatgaggccaaagaaaaa
ttgcagcaattaggggcgaaagtcgctggctcagtctcggcaaaaaccagtgccgtgatc
gccggcgataatgccggttctaagctggccaaagcggaagagctgggcgttgcggtctgg
actgaacaacagatgctggacttgttcgctgagcatggtctggccggatga
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