Rhodoferax aquaticus: EXZ61_10620
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Entry
EXZ61_10620 CDS
T06176
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhg
Rhodoferax aquaticus
Pathway
rhg03030
DNA replication
rhg03410
Base excision repair
rhg03420
Nucleotide excision repair
rhg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EXZ61_10620 (ligA)
03410 Base excision repair
EXZ61_10620 (ligA)
03420 Nucleotide excision repair
EXZ61_10620 (ligA)
03430 Mismatch repair
EXZ61_10620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhg03032
]
EXZ61_10620 (ligA)
03400 DNA repair and recombination proteins [BR:
rhg03400
]
EXZ61_10620 (ligA)
Enzymes [BR:
rhg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EXZ61_10620 (ligA)
DNA replication proteins [BR:
rhg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EXZ61_10620 (ligA)
DNA repair and recombination proteins [BR:
rhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EXZ61_10620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EXZ61_10620 (ligA)
MMR (mismatch excision repair)
DNA ligase
EXZ61_10620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EXZ61_10620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF2868
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QDL54583
UniProt:
A0A515EPJ1
LinkDB
All DBs
Position
2306046..2308130
Genome browser
AA seq
694 aa
AA seq
DB search
MDSLDLFSAAPLADDQARMQDLREQLHHHAHLYYVLDAPELPDAEYDRLFRELQALEAKH
PQWLTPDSPTQRVGGKPLDAFASVRHAVPMLSIRTETDTESTGAEAFDARIRRELELTDT
APAVEYVTELKFDGLAMSLRYEAGVLVQAATRGDGEFGEDVTQNIRTIGQIPLRLPEGVP
QVLEVRGEVYMRRDDFEALNERQRQRIAAGEKGEKTFVNPRNAAAGAVRQLDPNIAAQRP
LSFFAYGVGEITPQAAGALFATHMELLQTLKKWGFPVAAQVDIAQGATELVAYHGRIGAL
RDQLPFDIDGVVYKVNSIALQLRLGFVSREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGK
LTPVAKLAPVFVGGVTVTNATLHNEDEARRKDVRVGDTVVVRRAGDVIPEVVSVLLDKRP
DGAAQFTMPHICPVCQSAAVREEGEADYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGD
KLVEQLVDAGVIHTLPDLYRLGLSALASLERMADKSAQNIVDALEKSKQTTLPRFLFGLG
IRHVGESTAKELARHFGTLDAIMDASLETLLEVSDVGPIVAASIHTFFAQAHNREVVEQL
RACGVTWPEGTPASTGPKPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSVSKKTSY
VVAGTEAGSKLDKAQELGVAVLDEAGLLELLNGS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttggatttgttttctgccgcgccgctggcagacgatcaggcgcgcatgcaa
gacttgcgggagcagttacaccaccatgcgcacctgtattacgtgctggacgcgccagag
ctacctgacgcggaatacgaccgcctttttcgcgagctgcaggccttagaagccaagcat
ccccagtggttgacgcctgactcacccacgcaacgggtgggcggcaaacccttggacgcc
ttcgccagcgtgcgccatgctgtgcccatgctcagcattcgcaccgagaccgataccgag
tctacgggcgccgaggcctttgacgcccgcattcgccgagagctggagttgactgacacc
gcgccagcggtcgaatacgtcaccgagctcaagttcgatggcttggccatgagcctgcgc
tacgaagcgggtgttttggtgcaagcagccacccgaggcgacggcgagtttggcgaagac
gtgacccaaaacatccgcaccatcggtcaaataccgttgcgcctgccagagggcgtgccc
caagtactggaagtgcgtggtgaggtgtatatgcgccgcgacgactttgaggccctcaat
gagcggcagcgccaacgcattgccgccggtgagaagggcgaaaagacctttgtgaacccg
cgcaacgctgccgctggtgcggtgcgccagttagaccccaacatcgccgcgcagcgcccc
ctgagcttttttgcctatggcgtgggcgagattacgccccaagctgcaggcgccttgttc
gcgacccatatggaattgctgcaaacccttaaaaagtggggttttccggtggcggcgcag
gtggatattgcgcaaggcgctactgaattggtagcgtaccacggacgcataggtgcgctg
cgcgaccaactaccgttcgacattgacggcgtggtctacaaggtcaacagcattgccttg
caactgcgcttaggctttgtgagccgtgagccccgctgggcggtggcccacaaataccca
gcccaagagcagctaaccacggtcttggcgattgacgtgcaggttgggcgcactggcaag
ctcacaccggttgccaagctagcccctgtgtttgtgggcggtgtgacggtgaccaatgcc
acgctgcataacgaagacgaggcccgccgcaaagacgtacgagtgggtgacaccgtggtt
gtgcgccgcgcaggcgatgtaattcctgaggtggtgtctgtgctgctagacaagcgccca
gacggggccgcgcagttcaccatgccgcacatttgccccgtgtgccaatccgcagccgtg
cgcgaagagggcgaggcagactaccgctgcaccggcggtttgttttgcagcgcgcagcgc
aagcaagcgatcttgcatttcgcacagcgccgtgcggtagaggtggaaggcttgggcgac
aaactggtggagcagcttgtggacgccggtgtcatccacaccctgccagacctgtaccgc
ttaggcctcagtgccttggcaagcctagagcgcatggcggacaaatcagcccaaaacatc
gtggacgccctggaaaagtccaagcaaaccactttgccgcgctttttgtttggtctgggt
attcgccatgtgggtgaatctacggccaaagagttggcgcgtcacttcggcacgctggac
gcgatcatggacgcttcgcttgagaccttgctagaggtaagcgacgtggggcccatcgtc
gcggccagtattcacaccttcttcgcccaagcccacaaccgcgaggtggtggagcaattg
cgcgcctgtggcgtgacctggcctgaaggcaccccagcatcaactggccccaaacccttg
gcgggcaagaccttggtgctcactggcaccttgcccacgctaggccgtgacgccgccaaa
gacctgatcgaagccgcaggtggcaaagtcagcggatctgtgagcaagaaaaccagctac
gtggtggctggcactgaggcaggcagcaagctggataaagcgcaggagttgggcgtggcg
gtgctggacgaggctggactgttggagttactcaatggcagttaa
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