Rhizobium sp. AB2/73: I8E17_09785
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Entry
I8E17_09785 CDS
T10377
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhib Rhizobium sp. AB2/73
Pathway
rhib03030
DNA replication
rhib03410
Base excision repair
rhib03420
Nucleotide excision repair
rhib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I8E17_09785 (ligA)
03410 Base excision repair
I8E17_09785 (ligA)
03420 Nucleotide excision repair
I8E17_09785 (ligA)
03430 Mismatch repair
I8E17_09785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhib03032
]
I8E17_09785 (ligA)
03400 DNA repair and recombination proteins [BR:
rhib03400
]
I8E17_09785 (ligA)
Enzymes [BR:
rhib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I8E17_09785 (ligA)
DNA replication proteins [BR:
rhib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I8E17_09785 (ligA)
DNA repair and recombination proteins [BR:
rhib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I8E17_09785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I8E17_09785 (ligA)
MMR (mismatch excision repair)
DNA ligase
I8E17_09785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I8E17_09785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
UEQ82759
LinkDB
All DBs
Position
complement(1962342..1964492)
Genome browser
AA seq
716 aa
AA seq
DB search
MSTEQKPVEDLTEEEAAAALAYLAAEIARHDALYHGKDAPEISDAEYDALKRRNDAIEAR
FPALIRADSPSRRVGAAPSETFAPVVHARPMLSLDNTFSQEDVEDFVASVYRFLGRLPDN
SIAFTAEPKIDGLSMSIRYENGRMVSAATRGDGTTGENVTANIRTIKEIPQTLPAGAPSV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQYGMVQTFKSWGFPVNPLMERLNSVADILGHYEEIGLQRPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTRLVGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNADYIKGIGNKGEPIRDGRDIRVGDMVIVQRAGDVIPQIVDVVLEKREA
SSAPYEFPKVCPVCGSHAVRDINEKTGKVDAVTRCTGGFICRAQATEHLKHFVSRNAFDI
EGLGSKQIDFFFESEDPALQIKTAPDIFTLEKRQQASLTKLENIEGFGKVSVGKLYAAIN
ERRQIALHRFIFALGIRHVGETTAKLLARSYGTYEAFETAMKEAAPLAGDAWNDLNNIEG
IGEVVARAIVEFYKEPRNTQVIAKLLEEVQPQEAEQPVTSGSPVAGKTVVFTGSLEKFTR
DEAKAKAESLGAKVSGSVSKKTDIVVAGPGAGSKLDKAREFNVQVMTEDEWLDLIG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaacagaagcccgtcgaggatttgaccgaggaggaagcggccgcggcgctt
gcctatctggctgcggagatcgcgcgccacgacgcgctttatcatggcaaggatgcgccg
gagatttcggatgccgagtatgatgcgctgaagcggcgcaacgacgcgatcgaagccagg
tttcccgcattgattcgcgccgacagcccgtcgcggcgggtcggcgccgcgccatctgag
acgtttgctcccgtggtgcatgcaaggccgatgctctcgctcgacaacacgttctcacag
gaggatgtcgaggatttcgtcgccagcgtctatcgtttcctcggtcgcttgccggataat
tcgatagcctttactgccgagccgaagatcgacggcctttccatgtcgatccgttacgag
aatggccgcatggtcagcgcggcgacgcgcggcgacggtacgacaggtgagaacgtcacc
gccaatatcaggaccatcaaggaaatccctcagactttgccggcaggcgctccctccgtc
gtcgaagtgcggggtgaggtctatatggccaagagcgatttcctggcgctcaacgcgcag
atggaggccgagggcaagcagacctatgtcaatccccgcaatacggcggccggatcgctg
cgtcagctcgacgcgaaggtgacggcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtccgacatgccggcggatacgcaatacggcatggtgcagaccttcaaatcc
tggggctttcccgtcaatccgctgatggagcgcttgaattcggttgccgatattctcggc
cattacgaggagatcggcctgcagcggccggatctcgattatgatatcgacggtgtcgtc
tataaggtcgatagccttgaattgcaggcccgccttggtttccgctcgcgctcgccgcgc
tgggcgactgcgcataaatttccggcggaacaggccttcacacgtctggtcggcatcgat
atccaggtcggccgcactggcgcgctgacgccggtcgcgcggctagagccgatcacggtt
ggcggcgtcgtcgtgaccaatgcgacccttcataatgccgactacatcaaaggcatcggc
aacaagggcgagccgatccgcgatggccgggatatccgggtcggcgatatggtgatcgtg
cagcgggcgggcgacgtcattccgcagatcgtcgatgttgtgctcgagaagagggaggcg
tcgagcgcgccttacgagttccccaaagtctgtccggtctgcggcagccacgcggtacgc
gatatcaatgagaagaccgggaaggtcgatgccgtcacccgctgtaccggtggctttatc
tgccgcgcgcaggcgaccgagcatctcaagcatttcgtctcgcgcaatgccttcgatatc
gagggcctcggctccaagcagatcgatttctttttcgagagcgaggatccggcgctgcag
ataaagaccgcaccggacatcttcaccctcgaaaagcgtcagcaggcgtcactgacgaag
cttgagaatatcgaaggtttcggcaaggtcagtgtcggtaaactttatgccgcgatcaac
gagcggcgccagatcgccctgcatcgctttatcttcgcgcttggcatccgccacgtcggc
gagacgacggctaagcttctggcacgctcctacggcacctacgaagccttcgaaacagcg
atgaaggaagccgcgccgcttgccggcgacgcgtggaacgatcttaacaatatcgagggc
atcggcgaggtggtggcgcgagccatcgttgaattctacaaggaaccgcgcaatacgcag
gtaatcgcgaagcttttggaggaggttcagcctcaagaagcggagcagccggtgacctca
ggtagtccagtggccggcaagaccgtcgtctttaccggttcgctggaaaagtttacccgt
gacgaggccaaggcgaaggctgagagcctgggagccaaggtttccggctcggtgtcgaag
aagaccgatatcgtcgtggccggaccgggtgccggctccaagctcgacaaggcgcgcgag
tttaatgtccaggtcatgaccgaggacgagtggctggatttgatcggctga
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