Rhinolophus hipposideros (lesser horseshoe bat): 308496737
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Entry
308496737 CDS
T12007
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform 1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rhii Rhinolophus hipposideros (lesser horseshoe bat)
Pathway
rhii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
308496737 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhii03400
]
308496737 (LIG4)
Enzymes [BR:
rhii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
308496737 (LIG4)
DNA repair and recombination proteins [BR:
rhii03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
308496737 (LIG4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
308496737
NCBI-ProteinID:
XP_080902496
LinkDB
All DBs
Position
4:55345542..55355724
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQRSKGRADKIRHFREFLDSWRRFHSALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSAKRKDSVKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSHQIIFSVFHNDAIELHNVTTDLEKVCRQLHDPSVGLTDISI
TLFSPFKPMLAAIADIERIEKDMKNQSFYIETKLDGERMQMHKDGDVYEYFSRNGYKYTE
QFGAFPQEGSLTPFIHKAFKTDVQMCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRTRYEILSNIFTPIPGRIEIVQKTQAHTKNEVIDALNE
AIDNREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDIIIVGGYWGKGSRGGMM
SHFLCAVAEKPPSSEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKAPPSSILC
GTEKPEVYIEPCNSVIVQIKASEIVPSEMYRTGCTLRFPRIEKIREDKEWHECMTLDDLE
QLRGKASGKLASKHLYVGGDDEPQEKKRKAAPKFKKVIGIIEHLKAPNLSNINKVSNTFE
DVEFCVMNGIDSHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFIDTDLNQLKEVFSG
IKNADEQTPEEMAPVIADLEHRYSWDNSPLSMFRHHTIYLDLYTVINDLSSKIEGTRLAI
TALELRFHGAKVVSCLAEGVSHVIIGEDHSRVVDFKAFRRTLKRKFKILQEGWVTDSIDK
CVLQEECQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcgcaaactgttgcatctcacgttccttttgcagatttgtgt
tcaactttagaacgaatacagagaagcaaaggacgtgcagacaaaatcagacacttcagg
gaatttttagattcttggagaagatttcacagtgccctccataagaaccaaaaagatgtc
acagactctttttatccagcaatgagacttattcttcctcagctagaaagagagagaatg
gcgtatggaatcaaagaaactatgcttgccaagctttatattgaattgctcaatttacct
agagaaggaaaagatgctcttaaacttttaaattataggacacctactggaactcgtgga
gatgctggagactttgcaatgattgcatactttgtattgaaaccaagatgtttacagaaa
ggaagtttaaccatacaacaagtaaatgacattttagactcaattgccagcaataattct
gccaaaagaaaggactcagtaaagaagagtcttcttcagcttataactcagagttcggca
cttgaacaaaagtggcttatacgcatgattgtaaaggacttaaagcttggttttagtcac
caaattatattttctgtttttcataatgatgctattgagttgcataatgtcaccacagac
ttggaaaaagtctgcaggcaactgcatgatccttcagtaggactcactgacatttctatc
actttattctctccctttaaaccaatgcttgctgcaatagcagatattgagcgaattgaa
aaggacatgaaaaatcagagtttctacatcgaaaccaagctagatggtgagcgtatgcaa
atgcacaaagatggggatgtgtatgaatacttctcccgaaacggatataaatacacagaa
cagttcggtgcctttccacaagaaggttctcttacgccattcattcataaggcattcaaa
acagatgtacaaatgtgtatccttgatggtgagatgatggcctataatcctaatacacaa
acttttatgcagaaggggaacaagtttgatattaaaagaatggtagaagattctgatctg
caaacttgttactgtgtttttgatgtgttgatggtcaataataaaaaactgggacgtgag
accctgagaacaaggtatgaaattcttagtaatatttttacaccaataccaggtagaata
gaaatagtgcaaaaaacacaagctcatactaagaacgaagtaattgatgctctgaatgaa
gcaatagataacagagaagagggaatcatggttaaacatcctctatccatttataagcca
gacaaaagaggtgaaggatggttaaaaattaaaccagagtatgtaaatggactgatggat
gaattggacatcataattgtcgggggctattggggtaaaggttctcggggtggaatgatg
tctcattttttgtgtgctgtagcggagaaacccccttctagtgaaaaaccttcagtgttt
catactctctgtcgtgttggctcgggttacaccatgaaagaactgtatgatctgggttta
aaactggccaaacattggaagccttttcataaaaaagctccaccaagtagcattttatgt
ggaacagaaaagccagaagtgtacatagaaccttgtaattctgtcattgttcagattaaa
gcatcagagattgtccccagtgaaatgtatagaactggctgcactttgcgttttccacga
attgaaaagataagagaagacaaagagtggcatgaatgcatgactctcgatgacttagaa
caacttcgagggaaagcatctggaaagcttgcatctaaacacctttatgtaggtggtgat
gatgaaccacaagaaaaaaagcggaaagctgccccaaagtttaagaaagttattggaatt
atcgagcacttaaaagcacctaacctttctaacataaacaaagtttccaatacatttgaa
gatgtggagttttgtgttatgaatggaatagacagccatccgaagcctgatctggagaac
agaattgcagaacttggtggttacatagtacaaaatcccggcccagacacatactgtgtt
attgcagggtctgagaacatcagagtgaaaaacataatttcatcaaataaacatgatgtc
gttaagcctgagtggctgttagagtgttttaagaccaaaagctgtgtgccatggcagcct
cgctttatgattcacatgtgcccatcaacaaaacaacattttgcccgtgaatatgattgt
tatggcgatagttattttattgatacagatttgaaccaactgaaggaagtgttttcagga
attaaaaatgctgatgaacagactcctgaagaaatggctccggtgattgctgatttagaa
catcgatattcctgggacaactctccgctcagtatgtttcgacaccacaccatttatttg
gacttgtatactgttattaatgacttgagtagcaaaattgagggaacacgattagctatc
acagccttagagcttcgatttcatggagcaaaagtggtttcttgtttagctgagggagtg
tctcatgtaatcattggggaggatcatagtcgtgttgtagattttaaagcttttcgaaga
actcttaagagaaagtttaaaattctgcaagaaggttgggtaactgattcaatagacaaa
tgtgtattacaggaggaatgtcaatatttgctttaa
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